1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGAAGGAACAAATGTGCTTTTTTTTGGACAGGTTACTGGAAAGGCCCTGATTCTGGATGAGATTATCAACTATGTGCAGTCCCTGCAGAACCAAGTTGAGgtaaaaaaagaaaaaaaaagcaggagccatgaagaattaatactcagtgctaaaaatgtggcacttctagctgacaacaatttgcaaatcatatactcctgcctgttttttcag
species | Zea mays |
transcript | GRMZM5G882527_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGAACCAAGTGGAG TTCCTTTCCATGAGGATTGCCTCCATGAGCCCAGTGCTATATGGGTTCGGAEST: gi|14243392|gb|BG841045.2|BG841045
genomic: CAGAACCAAGTTGAGgtaaaaaaag ... gttttttcagTTCCTTTCCATGAGGATTGCCTCCATGAGCCCAGTGCTATATGGGTTCGGA
EST: ATGAGATTATCAACTATGTGCAGTCCCTGCAGAACCAAGTTGAG TTCCTTTCCATGAGGATTGCCTCCATGAGCCCAGTGCTATATGGGTTCGGAEST: gi|71769016|gb|DR966953.1|DR966953
genomic: ATGAGATTATCAACTATGTGCAGTCCCTGCAGAACCAAGTTGAGgtaaaaaaag ... gttttttcagTTCCTTTCCATGAGGATTGCCTCCATGAGCCCAGTGCTATATGGGTTCGGA
EST: CAGAACCAAGTTGAG TTCCTTTCCATGAGGATTGCCTCCATGAGCCCAGTGCTATATGGGTTCGGA
genomic: CAGAACCAAGTTGAGgtaaaaaaag ... gttttttcagTTCCTTTCCATGAGGATTGCCTCCATGAGCCCAGTGCTATATGGGTTCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGGAACAAATGTGCTTTTTTTTGGACAGGTTACTGGAAAGGCCCTGATTCTGGATGAGATTATCAACTATGTGCAGTCCCTGCAGAACCAAGTTGAGgtaaaaaaagaaaaaaaaagcaggagccatgaagaattaatactcagtgctaaaaatgtggcacttctagctgacaacaatttgcaaatcatatactcctgcctgttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG