Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCTGTGGAGGCCTTTGCCCTGGGCTCAATACTGTCATCAGAGAGTTGGTTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTCGGAATACAGgtttgattcgttccagattacctatatcgatgctggatgatatcatgtgttactattctctccagtctccacacatttttttaactcagcacttcctttc...

Basic information

species Zea mays
transcript GRMZM5G879882_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G879882_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g53680.1 (Oryza sativa), 5'ss of exon 5
AACCTGTGGAGGCCTTTGCCCTGGGCTCAATACTGTCATCAGAGAGTTGGTTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTCGGAATACAGgtttgattcgtt-ccagattacctatat-cgatgctggatgatatcatgtgttactattctctccagtctcca---cacatttttttaactcagcacttcctttc
|||||| |||||||||||||||||||| ||||| ||||| ||||||||||| || |||||||||||||||||||| || |   || ||||||| ||||||||||||    || |||| | ||||| || | |   || || || |    | | ||| |  |    | | |  |   |   || |  | ||  |  |         
AACCTGCGGAGGCCTTTGCCCTGGGCTAAATACGGTCATTAGAGAGTTGGTGTGCGGCTTGTCCCACATGTACAATGTCAATGATATCTTCGGCATACAGgtttgaaatatttccagctgacctaaataccaaaatgtattatgtggaatatcact-tagtaggaattttgaatggcgtgttctgctgacctataatgagg----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8367787|gb|BE050732.1|BE050732
EST:     TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTTGGAATCCAG                         AATGGGTACCAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAA
genomic: TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTCGGAATACAGgtttgattcg ... aattttgcagAATGGGTA-CAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAA
EST: gi|87153557|gb|DY398346.1|DY398346
EST:     TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTTGGAATCCAG                         AATGGGTACAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAG
genomic: TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTCGGAATACAGgtttgattcg ... aattttgcagAATGGGTACAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAG
EST: gi|28873675|gb|CB329630.1|CB329630
EST:     TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTCGGAATACAG                         AATGGGTACAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAG
genomic: TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTCGGAATACAGgtttgattcg ... aattttgcagAATGGGTACAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAG
EST: gi|19436208|gb|BM952618.1|BM952618
EST:     TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTTGGAATCCAG                         AATGGGTACAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAG
genomic: TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTCGGAATACAGgtttgattcg ... aattttgcagAATGGGTACAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAG