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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTATTGCCATGTATGCTACTCTTGCAAgcagagatgtggtgagttaatggcttctatttatgcctcaactattccagtcaatattctctagtttcttcaagtgtcctattttacatatttggccctg...

Basic information

species Zea mays
transcript GRMZM5G879882_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G879882_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g53680.1 (Oryza sativa), 5'ss of exon 10
GATTTATTGCCATGTATGCTACTCTTGCAAgcagagatgtggtgagttaatggcttctatttatgcc------tcaactattccagtcaa-tattctctagtttcttcaagtgtcctattttacatatttggccctg-------------------------------------------------------------
| |||||||| |||||||||||||||||||||||||| ||||| ||||||||  || ||| |||| |      |    | ||| |||||| |||||| |   ||| |    ||       | |   ||| | ||                                                                
GGTTTATTGCAATGTATGCTACTCTTGCAAGCAGAGACGTGgtaagttaatgctttatatctatgtcgttctttagtttcttcgagtcaaatattctgtgtattcatgttctgggtgcagtaatgcattggaccacctagcattcttcttctccacgaatggtacctcctattcattgggtttctctgtcttctatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14208413|gb|BG842091.1|BG842091
EST:     GATTTATTGCCATGTATGCTACTCTTGCAA                         ACAGGATGTGGGCGAGGCTGCTGTCTTCAACCAACCAACCGAGTTTCCTGA
genomic: GATTTATTGCCATGTATGCTACTCTTGCAAgcagagatgt ... aggataactgACAGGATGTGGGCGAGGCTGCTGTCTTCAACCAACCAACCGAGTTTCCTGA
EST: gi|87153557|gb|DY398346.1|DY398346
EST:     GATTTATTGCCATGTATGCTACTCTTGCAA                         GCAGAGATGTGG
genomic: GATTTATTGCCATGTATGCTACTCTTGCAAgcagagatgt ... aggataactgACAG-GATGTGG