1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgattgcagttagtcagtgcgattaaaactccaatccttatttgtggcctacccatgaaacgtctgtcaccaatgtaacatgttgtaagcaattttgcagAATGGGTACAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAGAGTGTGAATGATATCCACAAACGAGGTGGTACAGTTCTTGGAACATCAC
species | Zea mays |
transcript | GRMZM5G879882_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTTGGAATCCAG AATGGGTACCAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAEST: gi|87153557|gb|DY398346.1|DY398346
genomic: TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTCGGAATACAGgtttgattcg ... aattttgcagAATGGGTA-CAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAA
EST: TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTTGGAATCCAG AATGGGTACAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAGEST: gi|28873675|gb|CB329630.1|CB329630
genomic: TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTCGGAATACAGgtttgattcg ... aattttgcagAATGGGTACAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAG
EST: TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTCGGAATACAG AATGGGTACAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAGEST: gi|19436208|gb|BM952618.1|BM952618
genomic: TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTCGGAATACAGgtttgattcg ... aattttgcagAATGGGTACAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAG
EST: TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTTGGAATCCAG AATGGGTACAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAG
genomic: TTTGTGGCTTGTCCCACATGTACAACGTTAGCAATGTCTTCGGAATACAGgtttgattcg ... aattttgcagAATGGGTACAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAG
ggcctacccatgaaacgtctgtcaccaatgtaacatgttgtaagcaattttgcagAATGGGTACAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAGAGTGTGAATGATATCCACAAACGAGGTGGTACAGTTCTTGGAACATCAC
atgtaac putative branch site (score: 3)
aatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattgcagttagtcagtgcgattaaaactccaatccttatttgtggcctacccatgaaacgtctgtcaccaatgtaacatgttgtaagcaattttgcagAATGGGTACAAGGGGTTCTATTCGAGCAATTATCTTCCCATGACACCAAAGAGTGTGAATGATATCCACAAACGAGGTGGTACAGTTCTTGGAACATCAC
tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtcacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgta