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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctcattgaatttttattttgacttatttatattaatgtggttagcacttgattaattatttgcctattctcctgaacttttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACTTTGGCTTTCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACC

Basic information

species Zea mays
transcript GRMZM5G868981_T05
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G868981_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g41010.4 (Oryza sativa), 3'ss of exon 6
gtatgtctcattgaatttttattttgacttatttatattaatgtggttagcacttgattaattatttgcctattctcctgaacttttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACTTTGGCTTTCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACC
|||| | |  |  |||    |||||||||  |    ||| || | |||  |  ||| ||   |||||     ||||  ||||||||   |  ||||||||| ||||||||||||||| | || || |||||| | ||||| |||||||  || || ||||||||||| |||||||||||||| ||||| |||||
gtatatattttcaaatga--attttgactgttc---attgattttgttgtccattggtt---tattt-----ttcttatgaacttt-attttagGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtggttagcacttgattaattatttgcctattctcctgaacttttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACTTTGGCTTTCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACC
                                           ctttt  CT-rich tract
            acttgattaattattt  TA-rich tract