Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgctctggctccgccgctaagttgtctcttgtcgcaccctacgtatctaagctgcatctgagtggatttcccattggtgggggacaataaacggtgttctcag

Basic information

species Zea mays
transcript GRMZM5G868981_T05
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107106_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g41010.3 (Oryza sativa), 5'ss of exon 2
GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgctctggctccgccgctaagttgtctcttgtcgcaccctacgtatctaagctgcatctgagtggatttcc--cattgg--tgggggacaataaacggtgttctcag
|||||||  || ||||| || || || ||||| |||||||||||||||||||||||  | | | ||   |||  ||   |||  |      ||| | | ||||||||||||||| ||| || |    ||||  |||  ||| |   || |         
GTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACGgtaggtcgcttcgccgcggcgattaacctgcggctttcc----tttac-tgtttaagctgcatctgaggggaatttcatttttggtatggatgacgactcacag---------