1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttagtggagtcataatgtgaaggcgaattttttttccagtatgttgttttgtgtcatggttttcagttttgagcttcttcttgacagCTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATCAGACTGAAGACGACCTTCCCAAATTTCTGACTCTCAGTATACTATACCT
species | Zea mays |
transcript | GRMZM5G862101_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAG CTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATCEST: gi|111433414|gb|EE297731.1|EE297731
genomic: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAGgttagtggag ... ttcttgacagCTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATC
EST: TCTACGACAAAGATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAG CTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATCEST: gi|37397092|gb|CF635841.1|CF635841
genomic: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAGgttagtggag ... ttcttgacagCTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATC
EST: TCTACGACAAAGATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAG CTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATCEST: gi|14245109|gb|BG873691.1|BG873691
genomic: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAGgttagtggag ... ttcttgacagCTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATC
EST: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAG CTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTNTTTAGTTGCATCEST: gi|32859322|gb|CD999003.1|CD999003
genomic: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAGgttagtggag ... ttcttgacagCTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATC
EST: TAAACCTCTTCAAAATCCACCTAGCAG CTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATCEST: gi|16378009|gb|BI992239.1|BI992239
genomic: TAAACCTCTTCAAAATCCACCTAGCAGgttagtggag ... ttcttgacagCTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATC
EST: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAG CTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATCEST: gi|211010604|gb|FL466934.1|FL466934
genomic: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAGgttagtggag ... ttcttgacagCTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATC
EST: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAG CTTGAAGACAACCTTTGCCCACGAGCCTCNATGCAAGCTTTTTAGTTGCATEST: gi|71771977|gb|DR969914.1|DR969914
genomic: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAGgttagtggag ... ttcttgacagCTTGAAGACAACCTTTGCCCACGAGCCTC-ATGCAAGCTTTTTAGTTGCAT
EST: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAG CTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCEST: gi|71771976|gb|DR969913.1|DR969913
genomic: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAGgttagtggag ... ttcttgacagCTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGC
EST: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAG CTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATCEST: gi|211010605|gb|FL466935.1|FL466935
genomic: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAGgttagtggag ... ttcttgacagCTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATC
EST: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAG CTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATCEST: gi|211010606|gb|FL466936.1|FL466936
genomic: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAGgttagtggag ... ttcttgacagCTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATC
EST: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAG CTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATC
genomic: TCTACGACAAAAATTACAGACACTAAACCTCTTCAAAATCCACCTAGCAGgttagtggag ... ttcttgacagCTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATC
tttccagtatgttgttttgtgtcatggttttcagttttgagcttcttcttgacagCTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATCAGACTGAAGACGACCTTCCCAAATTTCTGACTCTCAGTATACTATACCT
cttcttctt CT-rich tract
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtggagtcataatgtgaaggcgaattttttttccagtatgttgttttgtgtcatggttttcagttttgagcttcttcttgacagCTTGAAGACAACCTTTGCCCACGAGCCTCATGCAAGCTTTTTAGTTGCATCAGACTGAAGACGACCTTCCCAAATTTCTGACTCTCAGTATACTATACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA