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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCACTCATATCACTTGCTTATCCTCTgtaagtatctcctttgtccttagttgactgtctcagtattttcctcttgatactatgtccaggggctaagccaggatttgttttttttttgggaggggga...

Basic information

species Zea mays
transcript GRMZM5G862101_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211223200|gb|FL136732.1|FL136732
EST:     GCCACTCATATCACTTGCTTATCCTCT                         ATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
genomic: GCCACTCATATCACTTGCTTATCCTCTgtaagtatct ... aactttgcagATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
EST: gi|32858463|gb|CD998144.1|CD998144
EST:     GCCACTCATATCACTTGCTTATCCTCT                         ATATGCTTCTGTTAGAGCGATAGAGACAAAAAATCCTGTAGATGATCAGCA
genomic: GCCACTCATATCACTTGCTTATCCTCTgtaagtatct ... aactttgcagATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
EST: gi|14245109|gb|BG873691.1|BG873691
EST:     GCCACTCATATCACTTGCTTATCCTCT                         ATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
genomic: GCCACTCATATCACTTGCTTATCCTCTgtaagtatct ... aactttgcagATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
EST: gi|211223194|gb|FL136726.1|FL136726
EST:     GCCACTCATATCACTTGCTTATCCTCT                         ATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
genomic: GCCACTCATATCACTTGCTTATCCTCTgtaagtatct ... aactttgcagATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
EST: gi|71771977|gb|DR969914.1|DR969914
EST:     GCCACTCATATCACTTGCTTATCCTCT                         ATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
genomic: GCCACTCATATCACTTGCTTATCCTCTgtaagtatct ... aactttgcagATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
EST: gi|211223203|gb|FL136735.1|FL136735
EST:     GCCACTCATATCACTTGCTTATCCTCT                         ATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
genomic: GCCACTCATATCACTTGCTTATCCTCTgtaagtatct ... aactttgcagATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
EST: gi|211223202|gb|FL136734.1|FL136734
EST:     GCCACTCATATCACTTGCTTATCCTCT                         ATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
genomic: GCCACTCATATCACTTGCTTATCCTCTgtaagtatct ... aactttgcagATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
EST: gi|211223197|gb|FL136729.1|FL136729
EST:     GCCACTCATATCACTTGCTTATCCTCT                         ATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
genomic: GCCACTCATATCACTTGCTTATCCTCTgtaagtatct ... aactttgcagATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
EST: gi|211221143|gb|FL136724.1|FL136724
EST:     GCCACTCATATCACTTGCTTATCCTCT                         ATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
genomic: GCCACTCATATCACTTGCTTATCCTCTgtaagtatct ... aactttgcagATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
EST: gi|211223201|gb|FL136733.1|FL136733
EST:     GCCACTCATATCACTTGCTTATCCTCT                         ATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
genomic: GCCACTCATATCACTTGCTTATCCTCTgtaagtatct ... aactttgcagATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
EST: gi|211223204|gb|FL136736.1|FL136736
EST:     GCCACTCATATCACTTGCTTATCCTCT                         ATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
genomic: GCCACTCATATCACTTGCTTATCCTCTgtaagtatct ... aactttgcagATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
EST: gi|211223195|gb|FL136727.1|FL136727
EST:     GCCACTCATATCACTTGCTTATCCTCT                         ATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA
genomic: GCCACTCATATCACTTGCTTATCCTCTgtaagtatct ... aactttgcagATATGCTTCTGTTAGAGCAATAGAGACAAAAAATCCTGTAGATGATCAGCA