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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACAAAAAATCCTGTAGATGATCAGCAGTGGCTCACTTACTGGGTGTTGTACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacggttctggtcatgtcccaatgtgttcatttttatggtttttgtggcctttgtgattatttgcaaacattattggtggtgcatggatatagctgtgtttggtgcatcaagttggtgaaaaggaaactagatatgctcactttagatctttatttgcag

Basic information

species Zea mays
transcript GRMZM5G862101_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G862101_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g12220.1 (Oryza sativa), 5'ss of exon 3
AGACAAAAAATCCTGTAGATGATCAGCAGTGGCTCACTTACTGGGTGTTGTACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacggttctggtcatgtcccaatgtgttcatttttatggtttttgtggcctttgtgattatttgcaaacattattggtggtgcatggatatagctgtgtttggtgcatcaagttggtgaaaaggaaactagatatgctcactttagatctttatttgcag
| ||||||  |||||| ||||||||||| |||||||||||||||||| ||||||| ||| |||||||||||||||| |||||||||||| | || || |||||| | ||  || |   |  |  |    |  ||  ||||| |  |  |  |  ||||| || |||       |  |   |      |    ||| ||||                                                                  
AAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCACTTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGgtaa-tgaccatttt--cctgggtcaggagattttttttttgtcttactcatttccttt-tgtttagcatttgatttccctcaaaaagttcagatttagcaaca--------------------------------------------------------------

upper sequence: GRMZM5G862101_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA05G01160.1 (Glycine max), 5'ss of exon 3
AGACAAAAAATCCTGTAGATGATCAGCAGTGGCTCACTTACTGGGTGTTGTACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacggttctggtcatgtcccaatgtgttcatttttatggtt--tttgtggcctttgtgattatttgcaaacattattggtggtgcatggatatagctgtgtttggtgcatcaagttggtgaaaaggaaactagatatgctcactttagatctttatttgcag
|||  ||   |||| | |||||||||||||||||||||||||||||  | ||||| ||  ||||  | ||||| || |||||||||  | |  | ||||||||   | |  || | || || ||    | ||||  || |  |  ||  ||||      | ||  | | |   |||| |    |  | |  |     | || || | ||                                                           
AGAGCAAGTCTCCTATTGATGATCAGCAGTGGCTCACTTACTGGGTTCTCTACTCCTTGATCACCCTCTTTGAACTTACTTTTGCTAAAGTCCTTGAGTGgta---tgcattttttgt-atatctttttatgttgtttatgttaattgatttgcaagaatagtactcagtgataaacgt----gacgataaacct-cagagttgagatt-----------------------------------------------------------

upper sequence: GRMZM5G862101_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA17G10730.1 (Glycine max), 5'ss of exon 3
AGACAAAAAATCCTGTAGATGATCAGCAGTGGCTCACTTACTGGGTGTTGTACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacggttctggtcatgtcccaatgtgttcatttttatggtttttgtggcctttgtgattatttgcaaacattattggtggtgcatggatatagctgtgtttggtgcatcaagttggtgaaaaggaaactagatatgctcactttagatctttatttgcag
|||  ||   |||  | |||||||||||||||||||||||||||||  | ||||| ||  ||||  | ||||| || || ||||||  | |  | || |||||  |||    | |  |    ||      |||| || || || ||||| |  |   |||||| || |    ||      |  |    | ||    | |   | |||||                                                         
AGAGCAAGTCTCCCATTGATGATCAGCAGTGGCTCACTTACTGGGTTCTCTACTCCTTGATCACACTCTTTGAACTTACCTTTGCTAGAGTCCTTGAATGgta--ttaacccttttttttcttct-----tgtttatgttaattgttttggaagg--ttgtgagtactcattaaatgccataataa-acttgagacttgagatttttggg--------------------------------------------------------

upper sequence: GRMZM5G862101_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv17s0000g05990.t01 (Vitis vinifera), 5'ss of exon 3
AGACAAAAAATCCTGTAGATGATCAGCAGTGGCTCACTTACTGGGTGTTGTACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacggttctggtcatgtcccaatgtgttcatttttatggtttttgtggcctttgtgattatttgcaaacattattggtggtgcatggatatagctgtgtttggtgcatcaagttggtgaaaaggaaactagatatgctcactttagatctttatttgcag
|||| ||    ||||| ||||||||||| |||||||| |||||||| ||||| ||  |  ||||  | || ||||| || ||||||  | | || || |||||| |     ||      ||||   ||    |||     | ||||   || |  ||||     |  |||     | |||   |    |||   |  | |  |  | |                                                          
AGACCAAGTCCCCTGTTGATGATCAGCAATGGCTCACATACTGGGTTTTGTATTCTATGATCACACTCTTCGAGCTCACCTTTGCTAAAGTCATTGAATGgtaa-tcgtatttt-----atgttt-aacactttccccaatgtggt---tgggctcttttcttctccttgagtggagtatcttttcctcattcttgaatcaataatggaa--------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211223200|gb|FL136732.1|FL136732
EST:     TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTG                         GCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
genomic: TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacg ... ttatttgcagGCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
EST: gi|32858463|gb|CD998144.1|CD998144
EST:     TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTG                         GCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
genomic: TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacg ... ttatttgcagGCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
EST: gi|14245109|gb|BG873691.1|BG873691
EST:     TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTG                         GCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
genomic: TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacg ... ttatttgcagGCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
EST: gi|211223194|gb|FL136726.1|FL136726
EST:     TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTG                         GCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
genomic: TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacg ... ttatttgcagGCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
EST: gi|71771977|gb|DR969914.1|DR969914
EST:     TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTG                         GCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
genomic: TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacg ... ttatttgcagGCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
EST: gi|71771976|gb|DR969913.1|DR969913
EST:     AACTTTTGCTCCAATTATCGAGTG                         GCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
genomic: AACTTTTGCTCCAATTATCGAGTGgtaaattacg ... ttatttgcagGCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
EST: gi|211223203|gb|FL136735.1|FL136735
EST:     TACTCATTTGNCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTG                         GCTTCCATTTTGGTCATATGCAAAACTGNTCTTTAACTGCTGGTTGGNCTT
genomic: TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacg ... ttatttgcagGCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
EST: gi|211010606|gb|FL466936.1|FL466936
EST:     GAGCTAACTTTTGCTCCAATTATCGAGTG                         GTTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
genomic: GAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacg ... ttatttgcagGCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
EST: gi|211223202|gb|FL136734.1|FL136734
EST:     TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTG                         GCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGG
genomic: TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacg ... ttatttgcagGCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGG
EST: gi|211223197|gb|FL136729.1|FL136729
EST:     TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTG                         GCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
genomic: TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacg ... ttatttgcagGCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
EST: gi|211221143|gb|FL136724.1|FL136724
EST:     TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTG                         GCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
genomic: TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacg ... ttatttgcagGCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
EST: gi|211223201|gb|FL136733.1|FL136733
EST:     TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTG                         GCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
genomic: TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacg ... ttatttgcagGCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
EST: gi|211223204|gb|FL136736.1|FL136736
EST:     TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCNATTATCGAGTG                         GCTTCCATTTTGGTCATATGCAAAANTGTTCTTTAACTGCTGGTTGG
genomic: TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacg ... ttatttgcagGCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGG
EST: gi|211223195|gb|FL136727.1|FL136727
EST:     TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTG                         GCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT
genomic: TACTCATTTGTCACTTTGTTTGAGCTAACTTTTGCTCCAATTATCGAGTGgtaaattacg ... ttatttgcagGCTTCCATTTTGGTCATATGCAAAACTGTTCTTTAACTGCTGGTTGGTCTT