1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAAGTATGAAATTGCTGACTGGGACCTTGGTGTCGGAATATACATAGACTTCTACGTTCTGAAGAACTCAATGCAAGAAAGAAATGCCATGGATGATTCGgtacaagcccttacttcagatacaaactcacaagcatttccttgtagaactgtggctgagatcagcattacttttttttgtttcag
species | Zea mays |
transcript | GRMZM5G861959_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCTACATTCTGAAGAACTCAATGCAAGAAAGAAATGCCATGGATGATTCG GATTCACTCGAGGAGATGAGTGAATCATGCAGAAGTTTCTTTGGCCGACTAEST: gi|74241216|gb|DT649130.1|DT649130
genomic: TCTACGTTCTGAAGAACTCAATGCAAGAAAGAAATGCCATGGATGATTCGgtacaagccc ... tttgtttcagGGTTCACTCGAGGAGATGAGTGAATCATGCAGAAGTTTCTTTGGCCGATTA
EST: TCTACGTTCTGAAGAACTCAATGCAAGAAAGAAATGCCATGGATGATTCG GATTCACTCGAGGAGATGAGTGAATCATGCAGAAGTTTCTTTGGTCGATTA
genomic: TCTACGTTCTGAAGAACTCAATGCAAGAAAGAAATGCCATGGATGATTCGgtacaagccc ... tttgtttcagGGTTCACTCGAGGAGATGAGTGAATCATGCAGAAGTTTCTTTGGCCGATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGTATGAAATTGCTGACTGGGACCTTGGTGTCGGAATATACATAGACTTCTACGTTCTGAAGAACTCAATGCAAGAAAGAAATGCCATGGATGATTCGgtacaagcccttacttcagatacaaactcacaagcatttccttgtagaactgtggctgagatcagcattacttttttttgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA