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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgttcaaacaatctattcattttattatcttttttttgataaacatggcattcctggtatgaatatgcagtcacttcattcgttgttattttggctcagCTAACCATCAGGAGGTCTGGAGGATCACAAGTGCCTTGGAGAACCACAAGTATGAAATTGCTGACTGGGACCTTGGTGTCGGAATATACATAGACTTCTA

Basic information

species Zea mays
transcript GRMZM5G861959_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78544501|gb|DV621999.1|DV621999
EST:     GGCTCATACTATTTTCGTGACTTCTGTTGCTCATTCTATGTTTCTGTCAT                         CTAACCATCAGGAGGTCTGGAGGATCACAAGTGCCTTGGAGAACCACAAGT
genomic: AGCTCATACTATTTTCGTGACTTCTGTTGCTCATTCTATGTTTCTGTCATgtaagttttg ... tttggctcagCTAACCATCAGGAGGTCTGGAGGATCACAAGTGCCTTGGAGAACCACAAGT
EST: gi|74241216|gb|DT649130.1|DT649130
EST:     AGCTCACACTATTTTCGTGACTTCTGTTGCTCATTCTATGTTTCTGTCAT                         CTAACCATCAGGAGGTCTGGAGGATCACAAGTGCCTTGGAGAACCACAAGT
genomic: AGCTCATACTATTTTCGTGACTTCTGTTGCTCATTCTATGTTTCTGTCATgtaagttttg ... tttggctcagCTAACCATCAGGAGGTCTGGAGGATCACAAGTGCCTTGGAGAACCACAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggcattcctggtatgaatatgcagtcacttcattcgttgttattttggctcagCTAACCATCAGGAGGTCTGGAGGATCACAAGTGCCTTGGAGAACCACAAGTATGAAATTGCTGACTGGGACCTTGGTGTCGGAATATACATAGACTTCTA
                                         ttatttt  CT-rich tract
                                      ttgttatttt  TA-rich tract