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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTTTTGCAGGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGACTCAAAGGCTATCAGAGAAAAGTTCACTGGCATGATAAGgtggtgcactggtgccttccccatgattttattttgccttgtgttggttccatcttttatttgtttccagttgatgtcttgtactacatttgctttagtt...

Basic information

species Zea mays
transcript GRMZM5G841900_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G841900_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g57070.1 (Oryza sativa), 5'ss of exon 3
CACTTTTGCAGGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGACTCAAAGGCTATCAGAGAAAAGTTCACTGGCATGATAAGgtg-gtgcactggtgccttccc---catgattttattttgccttgtgttggttccatcttttatttgtttccagttgatgtcttgtactacatttgctt-tagtt----------------------------------------------------------------------------------
           || || |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||  |||||||||||||||||||||||||  | |  ||| |  |||  |    ||| ||  ||||   | | | |  |     |||| |||| | |||   |||| |||   ||| | |     ||  | |                                                                                   
-----------GTGACGAAGGTTATGGCTAGGATGGCTTCTGCAGATATAATGTGTGTTGACTCAAAGGCTGTCAAGGAAAAGTTCACTGGCATGATAAGgtacgggttctgttttctttgctgatatgcttccatttaaacctttttcagggatctcttgtatt-gcttcgctttga-gtcagttaccaaacacatttacaatccaatgctcctgcttgccatatgttccttttagactatcacaacaaagttcttcatggttcagctatgctcctctgtttgtag

upper sequence: GRMZM5G841900_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv04s0043g00400.t01 (Vitis vinifera), 5'ss of exon 3
CACTTTTGCAGGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGACTCAAAGGCTATCAGAGAAAAGTTCACTGGCATGATAAGgtg-gtgcactggtgccttccccatgattttattttgccttgtgttggttccatcttttatttgtttccagttgatgtcttgtactacatt-tgctttagtt--
           || || || |||||||||||||||||||| || ||||| |||||||||| | | ||| || |  ||||||| || ||||| || || ||||  ||  | |  |   |  |     | |  |        ||       ||  |  |||| |||||    |||||| |  || | |  |||    ||||  |  
-----------GTTACTAAAGTTATGGCTAGAATGGCCTCAGCTGATATAATGTGTGTTGGCCCCAAGTCTGTGCGAGAAAAATTTACTGGAATAATTAGgtatgtaaatttttatgtatctgtctaatggaaaaaaggatgca---aatctgttatttagttgttgattgttgat-ttgtgcaatgaattgcagtttaaatga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166676501|gb|EG058226.1|EG058226
EST:     AGAAAAGTTCACTGGCATGATAAG                         GCAGCAAGATGTTCGTGCAACTGAAATTGACAAGGTGGATATGTACCAAAT
genomic: AGAAAAGTTCACTGGCATGATAAGgtggtgcact ... ttacctgcagGCAGCAAGATGTTCGTGCAACTGAAATTGACAAGGTGGATATGTACCAA-T