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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGGCCGGACGTGGCGCCTACGCCGACGGTCGCTCTGTGCGCGCGTCGGTCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttggcttggtagggtttctgatttccttttgttttgtgcgtgtgatgagttggtttgttcgtttgggctgcag

Basic information

species Zea mays
transcript GRMZM5G841900_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G841900_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g57070.1 (Oryza sativa), 5'ss of exon 1
CGCGGCCGGACGTGGCGCCTACGCCGACGGTCGCTCTGTGCGCGCGTCGGTCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggtt--------------ggcttggtagggtttctgatttccttttgttttgtgcgtgtgatgagttggtttgttcgtttgggctgcag
|   || || |  ||||||||||||||||| ||||  |||||||||||  |||| || |  |||||| ||||||||||  | || ||||||  ||| |||||||||||              |  ||||| | |  || |||| |  ||    | ||  | ||| |  ||||||| |    ||| ||||||||
CCTAGCGGGGCTCGGCGCCTACGCCGACGGCCGCTGCGTGCGCGCGTCCATCACTGGCCATCGCCGCCTCGTGCCGCCTCCTCCCGGCTCCACCGATCAGgtagggttcagctagggttttggatttggtggcgcctcggattcctcttctgatggtctgcgtggttggttggttcg---attttggctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74236574|gb|DT644488.1|DT644488
EST:     TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAG                         AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG