Sequence
atgc intronic sequence ATGC exonic sequence...gctgaattctgtacttggattcatgctcttgttcatcttggggacttagggaacctatcaggggaaagtttctcataaatttcctctgttttacctgcagGCAGCAAGATGTTCGTGCAACTGAAATTGACAAGGTGGATATGTACCAATCATATCGTCCTGGGGACATTGTTAAAGCTATGGTTGTATCCTTAATTGAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G841900_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g57070.2 (Oryza sativa), 3'ss of exon 3
---------------------------------------------------------------------------------gctgaattctgtacttggattc--atgctcttgttcatcttggggacttagggaacctatcaggggaaagtttctcataaatttcctctgttt---tacctgcagGCAGCAAGATGTTCGTGCAACTGAAATTGACAAGGTGGATATGTACCAATCATATCGTCCTGGGGACATTGTTAAAGCTATGGTTGTATCCTTAATTGAC
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gtacgggttctgttttctttgctgatatgcttccatttaaacctttttcagggatctcttgtattgcttcgctttgagtcagttaccaaacacatttacaatccaatgctcctgcttgccatatgttccttttagac-tatcacaacaaagttcttcatggttcagctatgctcctctgtttgtagGCAGCAAGATGTTCGTGCAACTGAAATCGACAAGGTGGATATGTTTCAGTCATACCGACCTGGTGATATTGTCAGAGCCCTGGTTGTATCCTTAAGGGGA
upper sequence: GRMZM5G841900_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g57070.1 (Oryza sativa), 3'ss of exon 3
---------------------------------------------------------------------------------gctgaattctgtacttggattc--atgctcttgttcatcttggggacttagggaacctatcaggggaaagtttctcataaatttcctctgttt---tacctgcagGCAGCAAGATGTTCGTGCAACTGAAATTGACAAGGTGGATATGTACCAATCATATCGTCCTGGGGACATTGTTAAAGCTATGGTTGTATCCTTAATTGAC
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gtacgggttctgttttctttgctgatatgcttccatttaaacctttttcagggatctcttgtattgcttcgctttgagtcagttaccaaacacatttacaatccaatgctcctgcttgccatatgttccttttagac-tatcacaacaaagttcttcatggttcagctatgctcctctgtttgtagGCAGCAAGATGTTCGTGCAACTGAAATCGACAAGGTGGATATGTTTCAGTCATACCGACCTGGTGATATTGTCAGAGCCCTGGTT---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|166676501|gb|EG058226.1|EG058226EST: AGAAAAGTTCACTGGCATGATAAG GCAGCAAGATGTTCGTGCAACTGAAATTGACAAGGTGGATATGTACCAAAT
genomic: AGAAAAGTTCACTGGCATGATAAGgtggtgcact ... ttacctgcagGCAGCAAGATGTTCGTGCAACTGAAATTGACAAGGTGGATATGTACCAA-T
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagggaacctatcaggggaaagtttctcataaatttcctctgttttacctgcagGCAGCAAGATGTTCGTGCAACTGAAATTGACAAGGTGGATATGTACCAATCATATCGTCCTGGGGACATTGTTAAAGCTATGGTTGTATCCTTAATTGAC
tttcctctgttttacc CT-rich tract
tttctcataaattt TA-rich tract