1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTGGCAGTATTTGCATCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAGgtaacgctggataaccttccctttcacagaatggaaacccgggagattcaatttggttttgtttcaacgcag
species | Zea mays |
transcript | GRMZM5G840928_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAG AGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAAEST: gi|76282804|gb|DV022372.1|DV022372
genomic: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAGgtaacgctgg ... ttcaacgcagAGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAA
EST: TCATGGGCACGACACTTTGTCTTGACAACCGAAGAACCTACAGAGAAAAG AGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCCGGAEST: gi|78122651|gb|DV541035.1|DV541035
genomic: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAGgtaacgctgg ... ttcaacgcagAGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCC-GGA
EST: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAG AGTTAATCCTATGACCCTTGGGTGCATATCTGCCTCCCTTCTACTCCGGAG
genomic: TCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAGgtaacgctgg ... ttcaacgcagAGTTAATCCTATGACCCTTGGGTGCATAGCTGCCTCCCTTCTACTCCGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGGCAGTATTTGCATCATGGGCACGACACTTTGTCTTGACAAACGAAGAACCTACAGAGAAAAGgtaacgctggataaccttccctttcacagaatggaaacccgggagattcaatttggttttgtttcaacgcag
- - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAC