1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatattagtaaattctaaaaaggctctgctcagatgccttagcttcacttttgttataattttggcttattccctgactatcttttttttattttgagctaatacatatgttgttttcatgtttctgaaatctgaagTTACACAAGTGAGTACTTTTGGTTCCCCAAGACGGTGTGGTGGTCAAGGTGACATCCTTTCTGGAAG
species | Zea mays |
transcript | GRMZM5G840928_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAG TTACACAAGTGAGTACTTTTGGGTCCCCAAGACGGTGTGGTGGTCAAGGTGEST: gi|71448822|gb|DR829872.1|DR829872
genomic: AACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAGgtatattagt ... aaatctgaagTTACACAAGTGAGTACTTTTGGTTCCCCAAGACGGTGTGGTGGTCAAGGTG
EST: AACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAG TTACACAAGTGAGTACTTTTGGTTCCCCAAGACGGTGTGGTGEST: gi|71767739|gb|DR965676.1|DR965676
genomic: AACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAGgtatattagt ... aaatctgaagTTACACAAGTGAGTACTTTTGGTTCCCCAAGACGGTGTGGTG
EST: AACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAG TTACACAAGTGAGTACTTTTGGTTCCCCAAGACGGTGTGGTGGTCAAGGTGEST: gi|76282804|gb|DV022372.1|DV022372
genomic: AACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAGgtatattagt ... aaatctgaagTTACACAAGTGAGTACTTTTGGTTCCCCAAGACGGTGTGGTGGTCAAGGTG
EST: AACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAG TTACACAAGTGAGTACTTTTGGTTCCCCCAGACGGTGTGGTGGTCAAGGTGEST: gi|78122651|gb|DV541035.1|DV541035
genomic: AACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAGgtatattagt ... aaatctgaagTTACACAAGTGAGTACTTTTGGTTCCCCAAGACGGTGTGGTGGTCAAGGTG
EST: AACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAG TTACACAAGTGAGTACTTTTGGTTCCCCAAGACGGTGTGGTGGTCAAGGTG
genomic: AACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAGgtatattagt ... aaatctgaagTTACACAAGTGAGTACTTTTGGTTCCCCAAGACGGTGTGGTGGTCAAGGTG
ttttttttattttgagctaatacatatgttgttttcatgtttctgaaatctgaagTTACACAAGTGAGTACTTTTGGTTCCCCAAGACGGTGTGGTGGTCAAGGTGACATCCTTTCTGGAAG
agctaat putative branch site (score: 3)
tttattttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattagtaaattctaaaaaggctctgctcagatgccttagcttcacttttgttataattttggcttattccctgactatcttttttttattttgagctaatacatatgttgttttcatgtttctgaaatctgaagTTACACAAGTGAGTACTTTTGGTTCCCCAAGACGGTGTGGTGGTCAAGGTGACATCCTTTCTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG