1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CACCAAATGTCTATGAGTACAAGCGTCTTGTTCAGAAGGTTCTTAACTGTGACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacacattattgttacttttttcaaactgtttttcatcatttgtgatgtaactaatgttttctgattattatttttgtctag
species | Zea mays |
transcript | GRMZM5G840928_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGEST: gi|89249729|gb|DY621515.1|DY621515
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAG
EST: ACGTAGATGAG-AAAGTGCTTCTGAGCAGCTAATCGCACTTTTGC-AAAA AATTGGTGATGTAACAATAATGEST: gi|76016158|gb|DT943328.1|DT943328
genomic: ACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTT-GCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATG
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|71448822|gb|DR829872.1|DR829872
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|71767739|gb|DR965676.1|DR965676
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|76018446|gb|DT945616.1|DT945616
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|76282804|gb|DV022372.1|DV022372
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|78122651|gb|DV541035.1|DV541035
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACCAAATGTCTATGAGTACAAGCGTCTTGTTCAGAAGGTTCTTAACTGTGACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacacattattgttacttttttcaaactgtttttcatcatttgtgatgtaactaatgttttctgattattatttttgtctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT