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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGTAGATGAGATCTACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaacacggctcaatgttttattcttttgctcttccactgaacccggtactctgttttggaacaacatatgtttggaccacctacaccaattgttcttaaagctttgtttctttgctttaccaaactacagagcgtagttgcttaagtctgccttttacag

Basic information

species Zea mays
transcript GRMZM5G840582_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G840582_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 5'ss of exon 8
ACAGTAGATGAGATCTACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaacacggctcaatgttttattcttttgctcttccactgaacccggtactct--gttttggaacaacatatgtttggaccacctacaccaattgttcttaaagctttgtttctttgctttaccaaactacagagcgtagttgcttaagtctgccttttacag
|||||||| ||||||||||||||||||||||| | ||| ||||| |||||||| ||||| |||||||||||  |||||    ||| ||||||  |    |  |||   || |    | || ||    ||     ||| |||    ||   ||     | |  |  |                                                                     
ACAGTAGACGAGATCTACAAGGTTGCATCAATCGCACTCAGTCCAAATGTTCCTGGGCAGATCTTTgtaagtcaaacaatattcattgtttttgtgcaattatctaaaacagctttccgttcttccagtggccaaaccacaagctttaaaactggaaatatgatat---------------------------------------------------------------------

upper sequence: GRMZM5G840582_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA01G03260.2 (Glycine max), 5'ss of exon 10
ACAGTAGATGAGATCTACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaacacggctcaatgttttattcttttgctcttccactgaacccggtactctgttttggaacaacatat--gtttggaccacctacaccaattgttcttaaagctttgtttctttgctttaccaaactacagagcgtagttgcttaagtctgccttttacag
||||| |||||||||||||||||||||||||||  ||| ||||| |||||||| |  ||||| ||||| ||    |     || |||||||   ||   |  | |     |  ||    ||  ||  ||   |     || |  ||  | ||   ||    |  | |   ||    | || ||  | |   |||||    |  | ||                            
ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttgat----ctaaatgtttc--tcagatattttaat-ttagacttaatatacttgttcaaagtgttattttagtgagtactttctctttccttgggaatttcctcattattcatatttcttaccctgttctacag----------------------------

upper sequence: GRMZM5G840582_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA02G04320.2 (Glycine max), 5'ss of exon 10
ACAGTAGATGAGATCTACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaacacggctcaatgttttattcttttgctcttccactgaacccggtactctgttttggaacaacatatgtttgg--accacctacaccaattgttc-ttaaagctttgtttctttgctttaccaaactacagagcgtagttgcttaagtctgccttttacag
||||| |||||||||||||||||||||||||||  ||| ||||| |||||||| |  ||||| ||||| ||    |     || |||||||   ||   |  | |     |  ||    ||  |   ||   |     || ||  ||   ||      |     |||  | ||    | || ||  | |   |||||    |  | ||                            
ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttggat----ctgaatgtttc--tcagatattttaat-ttagacttaatatacctgttcaaagtgttatttgagtgagtactgttctctttccttgggcatttcctcattattcatatttcttaccctgttctacag----------------------------

upper sequence: GRMZM5G840582_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv00s0225g00130.t01 (Vitis vinifera), 5'ss of exon 10
ACAGTAGATGAGATCTACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaacacggctcaatgttttattcttttgctct---tccactgaacccggtactctgttttggaacaacatatgtttggaccacctacaccaat-tgttcttaaagctttgtttctttgctttaccaaactacagagcgtagttgcttaagtctgccttttacag
|| || |||||||| || |||||||||||||||  ||| ||||| ||||| || ||||| || ||||||||    |    |   ||| ||||||| | | ||  |   | || |||||  | ||||||  |||       | | ||||   ||||      |  |  | |  ||  |  |||  |||||| ||||  ||                                      
ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga----gtctaatattttattttgtggcattctgttcattgaactggatactctcattt-------cctctgttcataccattatttctgagatatgttttcatattttcttctttccttttacag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32942724|gb|CF047543.1|CF047543
EST:     ACTGAGTCCGAATGTTCCCGGGCAAATCTTT                         ATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
genomic: ACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
EST: gi|78112475|gb|DV530869.1|DV530869
EST:     ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTT                         ATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
genomic: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
EST: gi|32850940|gb|CD990621.1|CD990621
EST:     ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTT                         ATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
genomic: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
EST: gi|32807630|gb|CD959864.1|CD959864
EST:     ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTT                         ATGGGAGTGATGGTTA
genomic: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTA
EST: gi|91054117|gb|EB164535.1|EB164535
EST:     ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTT                         ATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
genomic: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
EST: gi|7216933|gb|AW563070.1|AW563070
EST:     ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTT                         ATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATAC
genomic: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATAC
EST: gi|32845230|gb|CD984911.1|CD984911
EST:     TACTGAGTCCGAATGTTCCCGGGCAAATCTTT                         ATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
genomic: TACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
EST: gi|7227753|gb|AW566394.1|AW566394
EST:     ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTT                         ATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
genomic: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG