1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGGgtatggttgttcttgaaagaaaaaaaaaacatatcttttccactgatggatgtgatgccacttctactgaagagcaaaggataatttcgttgatataaatcttctgtggcag
species | Zea mays |
transcript | GRMZM5G840582_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGGTGTGATGCAAATGCTGGATGCCATCATTAGAAACGAGAGGGATGGG ATCTTGGTTTCTGTTCCTCAGTACCEST: gi|148974460|gb|EE025239.2|EE025239
genomic: AAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGGgtatggttgt ... tctgtggcagATCTTGGTTCCTGTTCCTCAGTACC
EST: AAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGG ATCTTGGTTCCTGTTCCTCAGTACCCACTTTATTCTGCTEST: gi|149070661|gb|EE159075.2|EE159075
genomic: AAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGGgtatggttgt ... tctgtggcagATCTTGGTTCCTGTTCCTCAGTACCCACTTTATTCTGCT
EST: AAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGG ATCTTGGTTCCTGTTCCTCAGTACCCACTTTATTCTGCTATCATTTCCCTCEST: gi|91048303|gb|EB158721.1|EB158721
genomic: AAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGGgtatggttgt ... tctgtggcagATCTTGGTTCCTGTTCCTCAGTACCCACTTTATTCTGCTATCATTTCCCTC
EST: AAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGG ATCTTGGTTCCTGTTCCTCAGTACCCACTTTATTCTGCTATCATTTCCCTCEST: gi|78112476|gb|DV530870.1|DV530870
genomic: AAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGGgtatggttgt ... tctgtggcagATCTTGGTTCCTGTTCCTCAGTACCCACTTTATTCTGCTATCATTTCCCTC
EST: AAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGG ATCTTGGTTCCTGTTCCTCAGTACCCACTTTATTCTGCTATCATTTCCCTCEST: gi|149041122|gb|EE046896.2|EE046896
genomic: AAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGGgtatggttgt ... tctgtggcagATCTTGGTTCCTGTTCCTCAGTACCCACTTTATTCTGCTATCATTTCCCTC
EST: AAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGG ATCTTGGTTCCTGTTCCTCAGTACCCACTTTATTCTGCTATCATTTCCCTC
genomic: AAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGGgtatggttgt ... tctgtggcagATCTTGGTTCCTGTTCCTCAGTACCCACTTTATTCTGCTATCATTTCCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGGgtatggttgttcttgaaagaaaaaaaaaacatatcttttccactgatggatgtgatgccacttctactgaagagcaaaggataatttcgttgatataaatcttctgtggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG