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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTTGAGAAACAAAGGCTGATCGAGTTTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATgtaaggtttggcaaacatagttcgcatatcacaaaaaatatattatattctacttaatgaaacaaatcatatccagtcaattctcgttcaatggttctag...

Basic information

species Zea mays
transcript GRMZM5G825854_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825854_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g34970.1 (Oryza sativa), 5'ss of exon 7
TTGGTTGAGAAACAAAGGCTGATCGAGTTTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATgtaaggtttggcaaacatagttcgcatatcacaaaaaatatattatattctacttaatgaaacaaat-catatccagtcaattct-cgt-tca-atggttctag
||| | ||||||||||||||||| ||||||||||| ||||||||||| ||| | || |||||||||||||| |||||||||||||||||||  | ||||| |  |||    |  | || ||||   |  | || || |||  ||| | | |||    | |||| | | ||| |      || 
TTGTTGGAGAAACAAAGGCTGATTGAGTTTGCAGAAGCACTTCGAAGTAGGTTGAACTACTTTGATGAATTGGAAAATgtaaggtttggcatccctagtttgtctattg--agcattagattaa--taaatttgattaaattaatgcctctcctacaagttctacatctcacacaagcataa

upper sequence: GRMZM5G825854_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 7
TTGGTTGAGAAACAAAGGCTGATCGAGTTTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATgtaaggtttggcaaaca--tagttcgcatatcacaaaaaatatattatattctacttaatgaaacaaatcatatccagtcaattctcgttcaatggttctag
 |    ||||||||||| || || || ||||| || |||||||| || |  |||||||||||||||||| | || ||||||||||||| |       | |   | || |        || || | ||   |  ||           |    |  | | |  |||  |   ||| | |   
CTACAAGAGAAACAAAGACTAATTGATTTTGCTGAAGCACTTCGTAGTAAACTCAATTACTTTGATGAACTGGAGAATgtaaggtttgactgctggcttgactggatctttttcttgatttagtttaccatcttttcctctttttttttggtttaatga--tctaatagcatgttacatc

upper sequence: GRMZM5G825854_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 8
TTGGTTGAGAAACAAAGGCTGATCGAGTTTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATgtaaggtttggcaaacatagttcgcata-tcacaaaaaatatattatattctacttaatgaaacaaatcatatccagtcaattctcgtt-caatggttctag
 | || ||||||||||| ||||| ||||||||||| |||||||| ||||  ||||| |||||||| || || || |||||||||||||      ||  |   ||   |           |   ||| | || ||  | ||| |  |  | |    |    |  | || ||||    | | 
CTAGTAGAGAAACAAAGACTGATTGAGTTTGCAGAAGCACTTCGCAGCAAACTCAACTACTTTGACGAGTTGGAGAATgtaaggtttgaatgctatcttgatcagggttttggtttgcttcaaataatatattttct-aaatatgttttgttttctagcctgacatttcaatcaaccaa-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93281267|gb|EB673531.1|EB673531
EST:     TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAAT                         GTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT
genomic: TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATgtaaggtttg ... ccttttacagGTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT
EST: gi|211066409|gb|FL073783.1|FL073783
EST:     TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAAT                         GTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT
genomic: TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATgtaaggtttg ... ccttttacagGTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT
EST: gi|148952057|gb|EC897846.2|EC897846
EST:     TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAAT                         GTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT
genomic: TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATgtaaggtttg ... ccttttacagGTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT
EST: gi|91872014|gb|EB401971.1|EB401971
EST:     TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAAT                         GTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT
genomic: TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATgtaaggtttg ... ccttttacagGTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT
EST: gi|32859413|gb|CD999094.1|CD999094
EST:     TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAAT                         GTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT
genomic: TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATgtaaggtttg ... ccttttacagGTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT