Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttaatgtcactatttctctaggcaatggaaagattgtgacaatactgtttgctcttctggctcttggacagACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAACACATGTGACGTAATCCTTAAGCAG

Basic information

species Zea mays
transcript GRMZM5G825854_T02
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211087679|gb|FL052576.1|FL052576
EST:     TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG                         ACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAAC
genomic: TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAGgtttgtttaa ... tcttggacagACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAAC
EST: gi|93281267|gb|EB673531.1|EB673531
EST:     TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG                         ACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAAC
genomic: TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAGgtttgtttaa ... tcttggacagACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAAC
EST: gi|211087678|gb|FL052575.1|FL052575
EST:     TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG                         ACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAAC
genomic: TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAGgtttgtttaa ... tcttggacagACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAAC
EST: gi|149104241|gb|EE289677.2|EE289677
EST:     TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG                         ACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAAC
genomic: TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAGgtttgtttaa ... tcttggacagACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAAC
EST: gi|211087686|gb|FL052583.1|FL052583
EST:     TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG                         ACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAA
genomic: TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAGgtttgtttaa ... tcttggacagACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAA
EST: gi|148952057|gb|EC897846.2|EC897846
EST:     TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG                         ACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAAC
genomic: TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAGgtttgtttaa ... tcttggacagACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAAC
EST: gi|91872014|gb|EB401971.1|EB401971
EST:     TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG                         ACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAAC
genomic: TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAGgtttgtttaa ... tcttggacagACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAAC
EST: gi|211087681|gb|FL052578.1|FL052578
EST:     TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAG                         ACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTTAAC
genomic: TTCTACAAGTGGTTTTCAGAACTGGAGTCAGCTATGAAATCTGAGgtttgtttaa ... tcttggacagACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaggcaatggaaagattgtgacaatactgtttgctcttctggctcttggacagACTGAGGAAAAATATCGACTTTATGAGAATACATTACAGGAGCGTGTCAACACATGTGACGTAATCCTTAAGCAG
                                   ctcttctggctctt  CT-rich tract
            aaagatt  TA-rich tract