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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgccttttcaacttcagtatataatgcaagcaaatatgaatgttttcccaaatgttatatcaagtggtttttcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGGTTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCA

Basic information

species Zea mays
transcript GRMZM5G825854_T02
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825854_T01 (Zea mays), 3'ss of exon 23
lower sequence: LOC_Os08g34970.1 (Oryza sativa), 3'ss of exon 23
gtgccttttcaacttcagtatataatgcaag-caaat-atgaatgttttcccaaatgttatatcaagtggtttttcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGGTTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCA
           | ||    | || ||||||| || || |||  | |||| |||  | ||  || ||      |||       ||||||   |||| ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| ||||||||||| ||||
---------gtattttccaagatgatgcaagtcagatcatgcttctttttccatgtatttcataaaaatcccttttt---gtagGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGTTGTATTTGCAAAATCCATCTACGCGGTTGATTTTATTCAAACCAATCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37392536|gb|CF633520.1|CF633520
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|37383203|gb|CF628592.1|CF628592
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|37389357|gb|CF631898.1|CF631898
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|86468964|gb|DY235334.1|DY235334
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|93281266|gb|EB673530.1|EB673530
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|6194992|gb|AW147096.1|AW147096
EST:     AGACTCAAGCTTTTGCTTTTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|211285685|gb|FL478243.1|FL478243
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|60348401|gb|DN215374.1|DN215374
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|32929996|gb|CF034808.1|CF034808
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|4776079|gb|AI665082.1|AI665082
EST:     TTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTCCCCCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: TTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|71432707|gb|DR813757.1|DR813757
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|60348441|gb|DN215414.1|DN215414
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|60341619|gb|DN208592.1|DN208592
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|60340575|gb|DN207548.1|DN207548
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGATAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|149104240|gb|EE289676.2|EE289676
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|211362787|gb|FL472151.1|FL472151
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|148953559|gb|EC898910.2|EC898910
EST:     AGACTCAAGCTTTTGCTTTTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|71432706|gb|DR813756.1|DR813756
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
EST: gi|211224223|gb|FK968322.1|FK968322
EST:     AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAG                         GTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG
genomic: AGACTCAAGCTTTTGCTTCTCCTGATAAAGTTGCTGAGCTAGTTCAGAAGgtgccttttc ... tcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagcaaatatgaatgttttcccaaatgttatatcaagtggtttttcctgaacagGTTGCCGCTGCCATTCAACAAGATTTGCCCAAAGTAATGACCAAGATGAGGTTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCA
                                         tttttcct  CT-rich tract
     aaatatgaatgtttt  TA-rich tract