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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggtttgttaactagagattctttttctttggcatccgactcaggagttccaacgcactacttgtttcgttaacatcacacttgctttttccttgcttcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAGACACTTTTTTGTCGAGCATCTGTTCGATGATCTGCATCAAGGTCAACCA

Basic information

species Zea mays
transcript GRMZM5G823750_T04
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5791479|gb|AI978271.1|AI978271
EST:     AGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGATTGAAGTTGTGAGAAG
genomic: AGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|60395120|gb|DN227989.1|DN227989
EST:     CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGATTGAAGTTGTGAGAAG
genomic: CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|29576943|gb|CB617055.1|CB617055
EST:     CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
genomic: CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|6022643|gb|AW067455.1|AW067455
EST:     CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGATTGAAGTTGTGAGAAG
genomic: CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|28361743|gb|CB240099.1|CB240099
EST:     CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAA
genomic: CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAA
EST: gi|78116157|gb|DV534545.1|DV534545
EST:     GCTTTTAGACAGGAAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
genomic: GCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|6056596|gb|AW091001.1|AW091001
EST:     CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGATTGAAGTTGTGAGAAG
genomic: CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|60351828|gb|DN218801.1|DN218801
EST:     CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
genomic: CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|6194514|gb|AW146618.1|AW146618
EST:     TTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGATTGAAGTTGTGAGAAG
genomic: TTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|29544924|gb|CB605532.1|CB605532
EST:     CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
genomic: CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgcactacttgtttcgttaacatcacacttgctttttccttgcttcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAGACACTTTTTTGTCGAGCATCTGTTCGATGATCTGCATCAAGGTCAACCA
               cgttaac  putative branch site (score: 3)
                            cttgctttttccttgc  putative PPT
                                            ttcattaa  TA-rich tract