1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agtgtcgtataaacaaaccgcaaaactgtcatttttaaatttttcttgcagacaatagctattggtaccaaatgcatgcttacgaaattctgttgtgcagGACTCAAATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGTTTATG
species | Zea mays |
transcript | GRMZM5G823750_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGGGTTCAGTACTGGGCACTTTTC-TTTTGTTGTTGGGTTCTCACAAAG GACTCAAATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGEST: gi|28361743|gb|CB240099.1|CB240099
genomic: GTGGGTTCAGTACTGGGCAC-TTTCGCGATGTTGTTGGGTTCCCACAAAGgttgctcact ... tgttgtgcagGACTCAAATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTG
EST: CGTGGGTTCAGTACTGGGCACTTTCGCGATGTTGTTGGGTTCCCACAAAG GACTCAAATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGEST: gi|6056596|gb|AW091001.1|AW091001
genomic: CGTGGGTTCAGTACTGGGCACTTTCGCGATGTTGTTGGGTTCCCACAAAGgttgctcact ... tgttgtgcagGACTCAAATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTG
EST: CGATGTTGTTGGGTTCCCACAAAG GACTCAAATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGEST: gi|60351828|gb|DN218801.1|DN218801
genomic: CGATGTTGTTGGGTTCCCACAAAGgttgctcact ... tgttgtgcagGACTCAAATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTG
EST: CGTGGGTTCAGTACTGGGCACTTTCGCGATGTTGTTGGGTTCCCACAAAG GACTCAAATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTG
genomic: CGTGGGTTCAGTACTGGGCACTTTCGCGATGTTGTTGGGTTCCCACAAAGgttgctcact ... tgttgtgcagGACTCAAATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTG
ttgcagacaatagctattggtaccaaatgcatgcttacgaaattctgttgtgcagGACTCAAATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGTTTATG
tgcttac putative branch site (score: 2)
ttctgtt putative PPT
aaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgtcgtataaacaaaccgcaaaactgtcatttttaaatttttcttgcagacaatagctattggtaccaaatgcatgcttacgaaattctgttgtgcagGACTCAAATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGTTTATG
- - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgc