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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCAAATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGTTTATGgtaaatctcaaggatatttgacctggtggtgatccctgtacaataattcatgcaaaggcatatccaagctatgtttagatgagagacaaattaataattt...

Basic information

species Zea mays
transcript GRMZM5G823750_T04
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29576943|gb|CB617055.1|CB617055
EST:     ATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGTTTATG                         GCTACGGTTTTATTGTCGGAAAGGCCTGTGCTAATGAAACCTGGCATCAAT
genomic: ATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGTTTATGgtaaatctca ... tacttctcagGCTACGGTTTTATTGTCGGAAAGGCCTGTGCTAATGAAACCTGGCATCAAT
EST: gi|6022643|gb|AW067455.1|AW067455
EST:     GGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGGTTATG                         GCTACGGTTTTATTGGCGGAAAGGCCTGTGCTAATGAAACCTGGCATCAAT
genomic: GGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGTTTATGgtaaatctca ... tacttctcagGCTACGGTTTTATTGTCGGAAAGGCCTGTGCTAATGAAACCTGGCATCAAT
EST: gi|28361743|gb|CB240099.1|CB240099
EST:     ATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGTTTATG                         GCTACGGTTTTATTGTCGGAAAGGCCTGTGCTAATGAAACCTGGCATCAAT
genomic: ATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGTTTATGgtaaatctca ... tacttctcagGCTACGGTTTTATTGTCGGAAAGGCCTGTGCTAATGAAACCTGGCATCAAT
EST: gi|6056596|gb|AW091001.1|AW091001
EST:     ATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGTTTATG                         GCTACGGTTTTATTGTCGGAAAGGCCTGTGCTAATGAAACCTGGCATCAAT
genomic: ATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGTTTATGgtaaatctca ... tacttctcagGCTACGGTTTTATTGTCGGAAAGGCCTGTGCTAATGAAACCTGGCATCAAT
EST: gi|60351828|gb|DN218801.1|DN218801
EST:     ATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGTTTATG                         GCTACGGTTTTATTGTCGGAAAGGCCTGTGCTAATGAAACCTGGCATCAAT
genomic: ATTGCTTGGGCGTCCACCTAATTCTCCATTAAGATCTTTGACTGTTTATGgtaaatctca ... tacttctcagGCTACGGTTTTATTGTCGGAAAGGCCTGTGCTAATGAAACCTGGCATCAAT