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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACATgtaagtgttctcaactattccttccagtagattgctacagtacatgtctgatcattttatatttgtgctcttgtcatcgttgcaactgtataaaatggtg...

Basic information

species Zea mays
transcript GRMZM5G807639_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G807639_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os04g32330.1 (Oryza sativa), 5'ss of exon 9
GTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACATgtaagtgttctcaac-tattccttccagtagattgctacagtacat-gtctgatcattttatatttgtgctcttgtcatcgttgcaactgtataaaatggtg
||||| ||||||||||||||||||||||||||||||||| | |||||||| || ||||| |||||||||||  | ||||||||||||||||||||||||||   |   |  |  |   ||   ||| ||  |      |||   |  |   | |    |||    |  || |||  | ||  ||   |   ||    
GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCACAAAACACATTTGCAATGCTGACCACATTTAATGAAGTTGACATgtaagttaacatgatgtcatttatcttttagttttttctttatcatcacccaaatgtatatggttttaaatggtgacatt-tggcccctaattttgattta-

upper sequence: GRMZM5G807639_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv10s0116g01480.t01 (Vitis vinifera), 5'ss of exon 12
GTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACATgtaagtgttctcaactattccttccagtagattg-ctacagtacatgtctgatcattttatatttgtgctcttgtcatcgttgcaactg--tataaaatggtg--
|| || ||| ||||  | ||||| ||| ||||||  ||| | || |||||||| ||||| |||||||||||  | ||||| ||||||||||| ||||||||  | |    ||    ||  | ||  |||  || |||   | |    |||||||   ||||| | |||    | | |||   |   | ||     |||  
GTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATATgtaagt--tgtatgttacagtttgaattattttgattatagtcagtattatctcatttt---tttgtccacttaatgtagctgcctttcattttagccaagtgcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32935625|gb|CF040437.1|CF040437
EST:     ATTCTCAGAACACCTTTGCAATGCTGA-GTACATTTAATGAAGTTGACAT                         GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
genomic: ATTCTCAGAACACCTTTGCAATGCT-ATCTACATTTAATGAAGTTGACATgtaagtgttc ... tatgatatagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: gi|67031724|gb|CO460473.1|CO460473
EST:     GATTCTCAGAACACCCTTGCAATGCTATCTACATTTAATGAAGTTGACAT                         GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGGC-CAAA
genomic: GATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACATgtaagtgttc ... tatgatatagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: gi|211169877|gb|FL077606.1|FL077606
EST:     GATTCTCAGAACACCTTTGCAATGCTATCTACRNKTAATGAAGTTGACAT                         GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
genomic: GATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACATgtaagtgttc ... tatgatatagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: gi|31349005|gb|CD433362.1|CD433362
EST:     GATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACAT                         GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
genomic: GATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACATgtaagtgttc ... tatgatatagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: gi|60343714|gb|DN210687.1|DN210687
EST:     GATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACAT                         GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
genomic: GATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACATgtaagtgttc ... tatgatatagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: gi|67025111|gb|CO453860.1|CO453860
EST:     GATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACAT                         GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
genomic: GATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACATgtaagtgttc ... tatgatatagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: gi|6020821|gb|AW065749.1|AW065749
EST:     GATTCTCAG-ACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACAT                         GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
genomic: GATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACATgtaagtgttc ... tatgatatagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: gi|6056485|gb|AW090875.1|AW090875
EST:     GATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAG-TGACAT                         GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
genomic: GATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACATgtaagtgttc ... tatgatatagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: gi|7031253|gb|AW461141.1|AW461141
EST:     GATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACAT                         GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
genomic: GATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACATgtaagtgttc ... tatgatatagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA