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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcggataatatcccattggagagttcagatgttgtatgagggacatgcacatattttaccatgatattgcagGTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACAT

Basic information

species Zea mays
transcript GRMZM5G807639_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G807639_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g32330.1 (Oryza sativa), 3'ss of exon 8
gtaagg-cggataatatc-ccattggagagttcagatgttgtatg----agggacatgcacatattttaccatgata--ttgcagGTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACAT
|||||  |   |   |||  || | |   |  ||||| || | |     ||| ||| ||| || ||| |||||  ||  ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| || ||||| |||||||||||  | ||||||||||||||||||||
gtaagatcaactttcatcatcaataggttgcacagatttttttttttacaggtacaagcatatctttaaccattttaatttgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCACAAAACACATTTGCAATGCTGACCACATTTAATGAAGTTGACAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67031724|gb|CO460473.1|CO460473
EST:     CGTCCCCTTCAGGAAC-ACAACTCCCCTCCAAAAGAACGGGAGCGGGCGG                         GTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAAGATTC
genomic: CGTCCCCTTCAG-AACCACAACTCCC-TCCAAAAGAACGGGAGCGG-CGGgtaaggcgga ... gatattgcagGTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTC
EST: gi|211169877|gb|FL077606.1|FL077606
EST:     CAAAAGAACGGGAGCGGCGG                         GTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
genomic: CAAAAGAACGGGAGCGGCGGgtaaggcgga ... gatattgcagGTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: gi|31349005|gb|CD433362.1|CD433362
EST:     AAACGTCCCCTTCAGAACCACAACTCCCTCCAAAAGAACGGGAGCGGCGG                         GTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
genomic: AAACGTCCCCTTCAGAACCACAACTCCCTCCAAAAGAACGGGAGCGGCGGgtaaggcgga ... gatattgcagGTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: gi|67025111|gb|CO453860.1|CO453860
EST:     AAACGTCCCCTTCAGAACCACAACTCCCTCCAAAAGAACGGGAGCGGCGG                         GTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
genomic: AAACGTCCCCTTCAGAACCACAACTCCCTCCAAAAGAACGGGAGCGGCGGgtaaggcgga ... gatattgcagGTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: gi|6056485|gb|AW090875.1|AW090875
EST:     GGGAGCGGCGG                         GTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
genomic: GGGAGCGGCGGgtaaggcgga ... gatattgcagGTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: gi|7031253|gb|AW461141.1|AW461141
EST:     AAACGTCCCCTTCAGAACCACAACTCCCTCCAAAAGAACGGGAGCGGCGG                         GTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
genomic: AAACGTCCCCTTCAGAACCACAACTCCCTCCAAAAGAACGGGAGCGGCGGgtaaggcgga ... gatattgcagGTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: gi|32834807|gb|CD974485.1|CD974485
EST:     AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG                         GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
genomic: AAACGTCCCCTTCAGAACCACAACTCCCTCCAAAAGAACGGGAGCGGCGGgtaaggcgga ... gatattgcagGTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagagttcagatgttgtatgagggacatgcacatattttaccatgatattgcagGTGCCGATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTCAGAACACCTTTGCAATGCTATCTACATTTAATGAAGTTGACAT
                               acatatttta  TA-rich tract