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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaattgttttggttctttctagcttccagcctgctttcatggcgatactttacctttcatgtgcagaagtcaataatagacactcaaataccatatctgttcgtaacaagatcagcagctgttcacatacaaagtgttgctttttctgactgttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATCATATCCAAGTCTGCTCAACCTGCTGAAACACATGTTGCTCCATCTGAGG

Basic information

species Zea mays
transcript GRMZM5G807639_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G807639_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g32330.1 (Oryza sativa), 3'ss of exon 7
gtgaattgttttggttctttctagcttccagcctgctttcatggcgatactttacctttcatgtgcagaagtcaataatagacactcaaataccatatctgttcgtaacaagatcagcagctgttcacatacaaagtgttgctttt-tctgactgttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATCATATCCAAGTCTGCTCAACCTGCTGAAACACATGTTGCTCCATCTGAGG
                                                                           | | | ||| | |  | |   |  ||   |         || ||  | |||||    ||  | ||  |||  ||   |  | |||| ||| |||||||||| ||||| || || |||||||||||||| |||||||| |||||||| ||||||||   ||| |||||||||||||||||||| |||||||
--------------------------------------------------------------------------gtgaaaaacattgaccttctcaacttggctgctttcg--ccatcatat-ttcactccgaagctatttttttgatcgtgccttggtttccagTTCATTGCTAGCGAAGGTGATACTGTTACTCCAGGCACCAAAGTTGCTATCATATCAAAGTCTGCGGCACCAGCTGAAACACATGTTGCTCCGTCTGAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32862756|gb|CF002438.1|CF002438
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAA
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAA
EST: gi|211042919|gb|FL416910.1|FL416910
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         TTCTTTGCTAGTGAAGGGGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|211518170|gb|FL380292.1|FL380292
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|211235901|gb|FL373720.1|FL373720
EST:     GTCACTATAGATGTCGCAANGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCA
genomic: GTCACTATAGATGTCGCAA-GTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCA
EST: gi|67031724|gb|CO460473.1|CO460473
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|211490936|gb|FL402016.1|FL402016
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACAC
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACAC
EST: gi|211094733|gb|FL379398.1|FL379398
EST:     GTCACTATAGATGTCGCAANGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAA-GTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|211437186|gb|FL418966.1|FL418966
EST:     GTCACTATAGATGTCGCAAGTTCCTGAAGCTGGTGTTATTGAATAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGG
genomic: GTCACTATAGATGTCGCAAGT-CCTGAAGCTGGTGTTATTGAA-AAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGG
EST: gi|30306817|gb|CD001490.1|CD001490
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|37420219|gb|CF647798.1|CF647798
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGCTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|211479894|gb|FL423794.1|FL423794
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAAT
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAAT
EST: gi|31349005|gb|CD433362.1|CD433362
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|211142865|gb|FL377125.1|FL377125
EST:     -TCCACTATAGATGTCGCAAGTCCTGGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAG
genomic: GTC-ACTATAGATGTCGCAAGTCCTG-AAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAG
EST: gi|211530093|gb|FL390761.1|FL390761
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCCGGCACTAAAGTTGGCA-T
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTG-CAAT
EST: gi|211305586|gb|FL419218.1|FL419218
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|211150258|gb|FL395029.1|FL395029
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|67025111|gb|CO453860.1|CO453860
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|93017175|gb|EB642695.1|EB642695
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|211539307|gb|FL400264.1|FL400264
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACT
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACT
EST: gi|211511665|gb|FL408091.1|FL408091
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGT-GCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|211441962|gb|FL416333.1|FL416333
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCG
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCG
EST: gi|32834807|gb|CD974485.1|CD974485
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|28187901|gb|CB179511.1|CB179511
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGGCACTAAAGTTGCAAT
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGG-CACTAAAGTTGCAAT
EST: gi|211063833|gb|FL423073.1|FL423073
EST:     GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAAGCTGGTGTTATTGAAAAGgtgaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagatcagcagctgttcacatacaaagtgttgctttttctgactgttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATCATATCCAAGTCTGCTCAACCTGCTGAAACACATGTTGCTCCATCTGAGG
                                    ttctgac  putative branch site (score: 2)
                   atacaaa  TA-rich tract