1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagatgcaattcagcagagaaaattccatcttttttcatgatgttagtcaatgctctaactggatcgcctccctttgcctcgtttgatcttatgcagCGCCTTACCCTGGTACTTATCCACCAAGACCCTATTGATATAGCAGCGTCAGTAATGATCTCAGGTAGAGGCATCAAAAGCAACAAACAACAGCCTTGAT
species | Zea mays |
transcript | GRMZM2G704277_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCAACAACCATACCCGCCCCCGCCAGCAGCAGAGTCGCCGTACCCACCAG CGCCTTACCCTGGTACTTATCCACCAAGACCCTATTGATATAGCAGCGTCAEST: gi|32793577|gb|CD945813.1|CD945813
genomic: GCAACAACCATACCCACCCCCGCCAGCAGCAGAGTCGCCGTACCCACCAGgtgagatgca ... tcttatgcagCGCCTTACCCTGGTACTTATCCACCAAGACCCTATTGATATAGCAGCGTCA
EST: GCAACAACCATACCCGCCCCCGCCAGCAGCAGAGTCGCCGTACCCACCAG CGCCTTACCCTGGTACTTATCCACCAAGACCCTATTGATATAGCAGCGTCAEST: gi|94477275|gb|EB706233.1|EB706233
genomic: GCAACAACCATACCCACCCCCGCCAGCAGCAGAGTCGCCGTACCCACCAGgtgagatgca ... tcttatgcagCGCCTTACCCTGGTACTTATCCACCAAGACCCTATTGATATAGCAGCGTCA
EST: GCAACAACCATACCCACCCCCGCCAGCAGCAGAGTCGCCGTACCCACCAG CGCCTTACCCTGGTACTTATCCACCAAGACCCTATTGATATAGCAGCGTCAEST: gi|89251013|gb|DY622799.1|DY622799
genomic: GCAACAACCATACCCACCCCCGCCAGCAGCAGAGTCGCCGTACCCACCAGgtgagatgca ... tcttatgcagCGCCTTACCCTGGTACTTATCCACCAAGACCCTATTGATATAGCAGCGTCA
EST: GCAACAACCATACCCACCCCCGCCAGCAGCAGAGTCGCCGTACCCACCAG CGCCTTACCCTGGTACTTATCCACCAAGACCCTATTGATATAGCAGCGTCA
genomic: GCAACAACCATACCCACCCCCGCCAGCAGCAGAGTCGCCGTACCCACCAGgtgagatgca ... tcttatgcagCGCCTTACCCTGGTACTTATCCACCAAGACCCTATTGATATAGCAGCGTCA
gttagtcaatgctctaactggatcgcctccctttgcctcgtttgatcttatgcagCGCCTTACCCTGGTACTTATCCACCAAGACCCTATTGATATAGCAGCGTCAGTAATGATCTCAGGTAGAGGCATCAAAAGCAACAAACAACAGCCTTGAT
atcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatgcaattcagcagagaaaattccatcttttttcatgatgttagtcaatgctctaactggatcgcctccctttgcctcgtttgatcttatgcagCGCCTTACCCTGGTACTTATCCACCAAGACCCTATTGATATAGCAGCGTCAGTAATGATCTCAGGTAGAGGCATCAAAAGCAACAAACAACAGCCTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA