Sequence
atgc intronic sequence ATGC exonic sequenceATCTGCTGGGGAAGTGAAGCTCATTATGCATGTTGATGTCTCAGCAATGgtgagagactgattactattgtttgttgttttcttagccctgtcttgcacctgattctgttgtgtctgacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G704277_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os06g43190.3 (Oryza sativa), 5'ss of exon 4
---------------------------------------------------ATCTGCTGGGGAAGTGAAGCTCATTATGCATGTTGATGTCTCAGCAATGgtgagagactgattactattgtttgttgttttct---tagccctgtcttgcacc--tgattctgttgtgtctgacag
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TACCTTGTGCTCATTGCACTTGTGAACTTCCTGATAGTAGTGTATCTTCAGGTCTGCTGGGGAAGTGACGCTCATTATGCATTTTGATGTTTCAGCAATGgtgagagactggttaatctttgctgccttattcttgttggtatggcattgcctcatgggttttcttatgtgcaccag
upper sequence: GRMZM2G704277_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os06g43190.1 (Oryza sativa), 5'ss of exon 5
ATCTGCTGGGGAAGTGAAGCTCATTATGCATGTTGATGTCTCAGCAATGgtgagagactgattactattgtttgttgttttct---tagccctgtcttgcacct--gattctgttgtgtctgacag
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GTCTGCTGGGGAAGTGACGCTCATTATGCATTTTGATGTTTCAGCAATGgtgagagactggttaatctttgctgccttattcttgttggtatggcattgcctcatgggttttcttatgtgcaccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32866754|gb|CF006436.1|CF006436EST: ATCTGCTGGGGAAGTGAAGCTCATTATGCATGTTGATGTCTCAGCAATG AAGAACAAGATGGGTAGAAGTGTCGCCGCATCAAGTGCACATCCTGTTCCT
genomic: ATCTGCTGGGGAAGTGAAGCTCATTATGCATGTTGATGTCTCAGCAATGgtgagagact ... tgtctgacagAAGAACAAGATGGGTAGAAGTGTCGCCGCATCAAGTGCACATCCTGTTCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCTGCTGGGGAAGTGAAGCTCATTATGCATGTTGATGTCTCAGCAATGgtgagagactgattactattgtttgttgttttcttagccctgtcttgcacctgattctgttgtgtctgacag
- - - - - - - TGAAGC
- - - - - - - - AGCTCA