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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagactgattactattgtttgttgttttcttagccctgtcttgcacctgattctgttgtgtctgacagAAGAACAAGATGGGTAGAAGTGTCGCCGCATCAAGTGCACATCCTGTTCCTGCACTTTCAATGCCAGCCCCATCTCCAACCCCAGCCCCAGCCCCATCTC

Basic information

species Zea mays
transcript GRMZM2G704277_T02
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32866754|gb|CF006436.1|CF006436
EST:     ATCTGCTGGGGAAGTGAAGCTCATTATGCATGTTGATGTCTCAGCAATG                         AAGAACAAGATGGGTAGAAGTGTCGCCGCATCAAGTGCACATCCTGTTCCT
genomic: ATCTGCTGGGGAAGTGAAGCTCATTATGCATGTTGATGTCTCAGCAATGgtgagagact ... tgtctgacagAAGAACAAGATGGGTAGAAGTGTCGCCGCATCAAGTGCACATCCTGTTCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtttgttgttttcttagccctgtcttgcacctgattctgttgtgtctgacagAAGAACAAGATGGGTAGAAGTGTCGCCGCATCAAGTGCACATCCTGTTCCTGCACTTTCAATGCCAGCCCCATCTCCAACCCCAGCCCCAGCCCCATCTC
                               acctgat  putative branch site (score: 4)
           ttttctta  TA-rich tract