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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAGCGGAAGCAAGTGCAATGGGGCCAAACCCAACAGCAGACCAGTTCGTCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcacattcacatcgcgctacaagcctacaatcccaaattgtgaggtggcctcggtttcgggtaaagatttgagtgagcttgggctttatctaaac...

Basic information

species Zea mays
transcript GRMZM2G553379_T06
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148980412|gb|EE027123.2|EE027123
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|76020108|gb|DT947278.1|DT947278
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|148958634|gb|EC904889.2|EC904889
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|9731862|gb|BE510614.1|BE510614
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|149083437|gb|EE172757.2|EE172757
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|76292652|gb|DV032220.1|DV032220
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|91052802|gb|EB163220.1|EB163220
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|71316727|gb|DR795037.1|DR795037
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|50325933|gb|CO521059.1|CO521059
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|148958084|gb|EC904274.2|EC904274
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|71425444|gb|DR806674.1|DR806674
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|86468156|gb|DY234526.1|DY234526
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|33466538|gb|CF243587.1|CF243587
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|37424944|gb|CF650206.1|CF650206
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|50324243|gb|CO519369.1|CO519369
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|71306905|gb|DR789608.1|DR789608
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|91876123|gb|EB406080.1|EB406080
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|78083431|gb|DV511824.1|DV511824
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|88749401|gb|DY533542.1|DY533542
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|89248658|gb|DY620444.1|DY620444
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|50333588|gb|CO528714.1|CO528714
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|76291866|gb|DV031434.1|DV031434
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|71325988|gb|DR799676.1|DR799676
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|78088355|gb|DV516748.1|DV516748
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|211128460|gb|FL066357.1|FL066357
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTMCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|8930412|gb|BE225176.1|BE225176
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|101396804|gb|EB820328.1|EB820328
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|50323593|gb|CO518719.1|CO518719
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|71440936|gb|DR821986.1|DR821986
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|211020971|gb|FL097345.1|FL097345
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|76011021|gb|DT938191.1|DT938191
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAGGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|149079784|gb|EE168783.2|EE168783
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|76927298|gb|DV171230.1|DV171230
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|148957750|gb|EC903875.2|EC903875
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|211128458|gb|FL066355.1|FL066355
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCARCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|86470069|gb|DY236439.1|DY236439
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|50329666|gb|CO524792.1|CO524792
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|74232112|gb|DT640026.1|DT640026
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|74242353|gb|DT650267.1|DT650267
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|76291867|gb|DV031435.1|DV031435
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|9952819|gb|BE639402.1|BE639402
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|149008922|gb|EE041142.2|EE041142
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|149001051|gb|EE038302.2|EE038302
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|74238830|gb|DT646744.1|DT646744
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|71314645|gb|DR793944.1|DR793944
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|86467441|gb|DY233811.1|DY233811
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|71302369|gb|DR787302.1|DR787302
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: gi|76913832|gb|DV165272.1|DV165272
EST:     TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG                         CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCAGCGGAAGCAAGTGCAATGGGGCCAAACCCAACAGCAGACCAGTTCGTCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcacattcacatcgcgctacaagcctacaatcccaaattgtgaggtggcctcggtttcgggtaaagatttgagtgagcttgggctttatctaaac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC