Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagccagacgccgccgctcctcaacactcagctagccctctgttttctcatgacgcaaattaaatttacagaaagcgttgctcctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACCCAACAGCAGACCAGTTCGTCTTCCTCGTGCTTCGTGATAAGGGAAGCTG

Basic information

species Zea mays
transcript GRMZM2G553379_T06
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148980412|gb|EE027123.2|EE027123
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|76020108|gb|DT947278.1|DT947278
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|148958634|gb|EC904889.2|EC904889
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|9731862|gb|BE510614.1|BE510614
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|149083437|gb|EE172757.2|EE172757
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|76292652|gb|DV032220.1|DV032220
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|91052802|gb|EB163220.1|EB163220
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|71316727|gb|DR795037.1|DR795037
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|50325933|gb|CO521059.1|CO521059
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|148958084|gb|EC904274.2|EC904274
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|71425444|gb|DR806674.1|DR806674
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|86468156|gb|DY234526.1|DY234526
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|33466538|gb|CF243587.1|CF243587
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|37424944|gb|CF650206.1|CF650206
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|50324243|gb|CO519369.1|CO519369
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|71306905|gb|DR789608.1|DR789608
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|91876123|gb|EB406080.1|EB406080
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|78083431|gb|DV511824.1|DV511824
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|88749401|gb|DY533542.1|DY533542
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|89248658|gb|DY620444.1|DY620444
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|50333588|gb|CO528714.1|CO528714
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|76291866|gb|DV031434.1|DV031434
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|87156609|gb|DY401398.1|DY401398
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|71325988|gb|DR799676.1|DR799676
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|78088355|gb|DV516748.1|DV516748
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|211128460|gb|FL066357.1|FL066357
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTC-CGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|8930412|gb|BE225176.1|BE225176
EST:     GAAGGAGAAGTCGCTGCAGGAGGAGACCAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAAGGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|101396804|gb|EB820328.1|EB820328
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|50323593|gb|CO518719.1|CO518719
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|71440936|gb|DR821986.1|DR821986
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|211020971|gb|FL097345.1|FL097345
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|76011021|gb|DT938191.1|DT938191
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|22935963|gb|BU572238.1|BU572238
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGC
EST: gi|149079784|gb|EE168783.2|EE168783
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|76927299|gb|DV171231.1|DV171231
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCCGGAAGCAAGTGCAATGGGG
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGC-GGAAGCAAGTGCAATGGGG
EST: gi|76927298|gb|DV171230.1|DV171230
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|211128458|gb|FL066355.1|FL066355
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|86470069|gb|DY236439.1|DY236439
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|50329666|gb|CO524792.1|CO524792
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|76280608|gb|DV020176.1|DV020176
EST:     GAGAAGTCGCTGCAGGAGGAGAACAGGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAA
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAA
EST: gi|74232112|gb|DT640026.1|DT640026
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|74242353|gb|DT650267.1|DT650267
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|76291867|gb|DV031435.1|DV031435
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|9952819|gb|BE639402.1|BE639402
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|149008922|gb|EE041142.2|EE041142
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|149001051|gb|EE038302.2|EE038302
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|74238830|gb|DT646744.1|DT646744
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|71314645|gb|DR793944.1|DR793944
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|86467441|gb|DY233811.1|DY233811
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|71302369|gb|DR787302.1|DR787302
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: gi|76913832|gb|DV165272.1|DV165272
EST:     GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG                         CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgttttctcatgacgcaaattaaatttacagaaagcgttgctcctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACCCAACAGCAGACCAGTTCGTCTTCCTCGTGCTTCGTGATAAGGGAAGCTG
                                          ctcctgcct  CT-rich tract
                  aaattaaatttacaga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagccagacgccgccgctcctcaacactcagctagccctctgttttctcatgacgcaaattaaatttacagaaagcgttgctcctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACCCAACAGCAGACCAGTTCGTCTTCCTCGTGCTTCGTGATAAGGGAAGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG