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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCCTGGCCTTTCTAAATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtcaagcttgtgtcaggctcttatttattttttatcatgttggaagtcacggaacacgatggtgcttctctatatgaattttcagctaaggtta...

Basic information

species Zea mays
transcript GRMZM2G481755_T01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18384036|gb|BM417236.1|BM417236
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCGTCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|4885832|gb|AI676952.1|AI676952
EST:     ATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|86473156|gb|DY239526.1|DY239526
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|211145063|gb|FL198583.1|FL198583
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|16379847|gb|BI993176.1|BI993176
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|76293935|gb|DV033503.1|DV033503
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|13515952|gb|BG518228.1|BG518228
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|60355006|gb|DN221979.1|DN221979
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|16816798|gb|BM056039.1|BM056039
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACC
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACC
EST: gi|93283191|gb|EB675455.1|EB675455
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|148929470|gb|EC875572.2|EC875572
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|45847404|gb|CN071347.1|CN071347
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTAGGCGTCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|148999994|gb|EE037082.2|EE037082
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|149002181|gb|EE038858.2|EE038858
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|37375068|gb|CF623948.1|CF623948
EST:     ATTTT-CTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCGTCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|110202350|gb|EC884247.1|EC884247
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTCCCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|149070161|gb|EE158564.2|EE158564
EST:     ATTTTGCTTATACATTGCTGGGGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|89249066|gb|DY620852.1|DY620852
EST:     ATTTTGCTTATACATTGCTGGGGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|86470375|gb|DY236745.1|DY236745
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|211167197|gb|FL456893.1|FL456893
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|26559733|gb|CA831968.1|CA831968
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|86473085|gb|DY239455.1|DY239455
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTCCCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|37375476|gb|CF624176.1|CF624176
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCGTCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|78092900|gb|DV521274.1|DV521274
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|22819291|gb|BU499381.1|BU499381
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|40334619|gb|CK368689.1|CK368689
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCGTCCTAC-GGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|166661101|gb|EG170201.1|EG170201
EST:     TCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCGTCCTACCGGAGCGTATATTATGTT
genomic: TCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|110524328|gb|EE028512.1|EE028512
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTCCCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|149069158|gb|EE157887.2|EE157887
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|87157193|gb|DY401982.1|DY401982
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|149103580|gb|EE288980.2|EE288980
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|148980799|gb|EE027355.2|EE027355
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|78026847|gb|DV495234.1|DV495234
EST:     ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
EST: gi|91876038|gb|EB405995.1|EB405995
EST:     ATTTTGCTTATACATTGCGGGGGCTTAACTACTCCTGCATCGGGTTCCAG                         GTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT
genomic: ATTTTGCTTATACATTGCTGGTGCTTAACTACTCCTGCATCGGGTTCCAGgtcagtgtca ... ttctctgaagGTACTGAGCTTCAAAGAAACCTTGGCATCCTACCGGAGCGTATATTATGTT