Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctctatccatcatggtttttttaattaactgctaccctcttactgctaggtttgctgcgtccagtggcgtagtgggttagagccttaggggtgg...

Basic information

species Zea mays
transcript GRMZM2G481755_T01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18384036|gb|BM417236.1|BM417236
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTCCTGAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|86473156|gb|DY239526.1|DY239526
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|211145063|gb|FL198583.1|FL198583
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTCCTGAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|16379847|gb|BI993176.1|BI993176
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|76293935|gb|DV033503.1|DV033503
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|13515952|gb|BG518228.1|BG518228
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|60355006|gb|DN221979.1|DN221979
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|16816798|gb|BM056039.1|BM056039
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTCCTGAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|93283191|gb|EB675455.1|EB675455
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|148929470|gb|EC875572.2|EC875572
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|45847404|gb|CN071347.1|CN071347
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCTCGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTCCTGAA-CGGTATC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACT-AAGCGGTATC
EST: gi|148999994|gb|EE037082.2|EE037082
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|149002181|gb|EE038858.2|EE038858
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTATTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|110202350|gb|EC884247.1|EC884247
EST:     TATATCATATTCTTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
genomic: TATATCATATTC-TTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTAT-C
EST: gi|149070161|gb|EE158564.2|EE158564
EST:     ATATATCATATTTTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTATTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|89249066|gb|DY620852.1|DY620852
EST:     ATATATCATATT-TTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGAGGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|86470375|gb|DY236745.1|DY236745
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|211167197|gb|FL456893.1|FL456893
EST:     TATATCATATTCTTTGTTCAATCAGCATTGATGATAAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
genomic: TATATCATATTCTTTGTTCAATCAGCATTGATGAT-AAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|26559733|gb|CA831968.1|CA831968
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTCCTGAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|16746137|gb|BM032567.1|BM032567
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCA
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCA
EST: gi|86473085|gb|DY239455.1|DY239455
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|37375476|gb|CF624176.1|CF624176
EST:     ATATTTCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTCCTGAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|78092900|gb|DV521274.1|DV521274
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCCCGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTATTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|22819291|gb|BU499381.1|BU499381
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTCCTGAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|40334619|gb|CK368689.1|CK368689
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGNCA-GCAGCGAGCAGTTCATTCCTGAGCGGTATC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAG-CAAGCAGCGAGCAGTTCATTACTAAGCGGTATC
EST: gi|110524328|gb|EE028512.1|EE028512
EST:     TTCAATCAGCATTGAGGATAAATGTTTCCCGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTATTAAGCGGTATCC
genomic: TTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|149069158|gb|EE157887.2|EE157887
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTATTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|87157193|gb|DY401982.1|DY401982
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTCCTGAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|149103580|gb|EE288980.2|EE288980
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTATTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|148980799|gb|EE027355.2|EE027355
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|78026847|gb|DV495234.1|DV495234
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTCCTGAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
EST: gi|91876038|gb|EB405995.1|EB405995
EST:     ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG                         TTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC
genomic: ATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAGgtacctctct ... tccaatgcagTTATATACAGATGGCAGCAAGCAGCGAGCAGTTCATTACTAAGCGGTATCC