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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaatggcattcttatcccaccagcttgtcttgtgattgacactttgcatacatttacccacagtgatttgtccttttatctgatctactcattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG

Basic information

species Zea mays
transcript GRMZM2G481755_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18384036|gb|BM417236.1|BM417236
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|4646586|gb|AI491387.2|AI491387
EST:     CAGGTTTCCTTCAATTGTTGGGTACNCAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|86473156|gb|DY239526.1|DY239526
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|211145063|gb|FL198583.1|FL198583
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|76293935|gb|DV033503.1|DV033503
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|13515952|gb|BG518228.1|BG518228
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|60355006|gb|DN221979.1|DN221979
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|16816798|gb|BM056039.1|BM056039
EST:     CAGGTTTCCTTCAATGGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|93283191|gb|EB675455.1|EB675455
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|148929470|gb|EC875572.2|EC875572
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|45847404|gb|CN071347.1|CN071347
EST:     AATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: AATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|148999994|gb|EE037082.2|EE037082
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|149002181|gb|EE038858.2|EE038858
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|110202350|gb|EC884247.1|EC884247
EST:     AAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTTGTTCAATCAGCATTGATGAT
genomic: -AGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTC-TTTGTTCAATCAGCATTGATGAT
EST: gi|149070161|gb|EE158564.2|EE158564
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTTTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|86470375|gb|DY236745.1|DY236745
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|16746137|gb|BM032567.1|BM032567
EST:     CCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|86473085|gb|DY239455.1|DY239455
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|37375476|gb|CF624176.1|CF624176
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATTTCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|78092900|gb|DV521274.1|DV521274
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|22819291|gb|BU499381.1|BU499381
EST:     ACAGTCAG-GCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: ACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|40334619|gb|CK368689.1|CK368689
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|149069158|gb|EE157887.2|EE157887
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|87157193|gb|DY401982.1|DY401982
EST:     ATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: ATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|149103580|gb|EE288980.2|EE288980
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|148980799|gb|EE027355.2|EE027355
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|78026847|gb|DV495234.1|DV495234
EST:     CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATTTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: gi|91876038|gb|EB405995.1|EB405995
EST:     TTGGGTACACAGACAGTCAGTGCCATCTGGCAT                         GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: TTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatacatttacccacagtgatttgtccttttatctgatctactcattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG
                                 atctgat  putative branch site (score: 4)
                                           ctcattcc  putative PPT
                             ttttatct  TA-rich tract