1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaataataaacgcaagcaagcagaccagacgacagacgtccagagcagcagaccatgtgataactttaactgcgcgtctgcgtgcgtgcagGGCATTTGGAGCGGCATGGTCATCGGGGGAACCATGATGCAGACGCTCATCCTGCTCTGGGTCACCTTCAGAACAGACTGGACCAAGGAG
species | Zea mays |
transcript | GRMZM2G470075_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGTGCCGCTCGGCGTCTTCCTCGGCTTCTACCTCGACCTCGGCGCCAAG GGCATTTGGAGCGGCATGGTCATCGGGGGAACCATGATGCAGACGCTCATCEST: gi|76287403|gb|DV026971.1|DV026971
genomic: GCGTGCCGCTCGGCGTCTTCCTCGGCTTCTACCTCGACCTCGGCGCCAAGgtaataataa ... gtgcgtgcagGGCATTTGGAGCGGCATGGTCATCGGGGGAACCATGATGCAGACGCTCATC
EST: GCGTGCCGCTCGGCGTCTTCCTCGGCTTCTACCTCGACCTCGGCGCCAAG GGCATTTGGAGCGGCATGGTCATCGGGGGAACCATGATGCAGACGCTCATCEST: gi|71767622|gb|DR965559.1|DR965559
genomic: GCGTGCCGCTCGGCGTCTTCCTCGGCTTCTACCTCGACCTCGGCGCCAAGgtaataataa ... gtgcgtgcagGGCATTTGGAGCGGCATGGTCATCGGGGGAACCATGATGCAGACGCTCATC
EST: GCGTGCCGCTCGGCGTCTTCCTCGGCTTCTACCTCGACCTCGGCGCCAAG GGCATTTGGAGCGGCATGGTCATCGGGGGAACCATGATGCAGACGCTCATC
genomic: GCGTGCCGCTCGGCGTCTTCCTCGGCTTCTACCTCGACCTCGGCGCCAAGgtaataataa ... gtgcgtgcagGGCATTTGGAGCGGCATGGTCATCGGGGGAACCATGATGCAGACGCTCATC
cgtccagagcagcagaccatgtgataactttaactgcgcgtctgcgtgcgtgcagGGCATTTGGAGCGGCATGGTCATCGGGGGAACCATGATGCAGACGCTCATCCTGCTCTGGGTCACCTTCAGAACAGACTGGACCAAGGAG
ataactttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataataaacgcaagcaagcagaccagacgacagacgtccagagcagcagaccatgtgataactttaactgcgcgtctgcgtgcgtgcagGGCATTTGGAGCGGCATGGTCATCGGGGGAACCATGATGCAGACGCTCATCCTGCTCTGGGTCACCTTCAGAACAGACTGGACCAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG