Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcacagtatcacctcacgtacgtaaaaacacaagtcagctttttttggtccatctcatcatctctcatggtcggccgccgcccgccggatggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCGCACAAGCACGGCATGCTGGGGGTGTACCTGCAGCGGTCGACGGTGCTGC

Basic information

species Zea mays
transcript GRMZM2G470075_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211404883|gb|FL009730.1|FL009730
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211285525|gb|FL009688.1|FL009688
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211399797|gb|FL009705.1|FL009705
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211402347|gb|FL009721.1|FL009721
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211412557|gb|FL009777.1|FL009777
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|86466771|gb|DY233141.1|DY233141
EST:     CCGCGTCTCTCGGCAACACCGGTATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACTCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211412553|gb|FL009773.1|FL009773
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211409997|gb|FL009757.1|FL009757
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211404892|gb|FL009739.1|FL009739
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211410008|gb|FL009768.1|FL009768
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211407437|gb|FL009747.1|FL009747
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|148933721|gb|EC877635.2|EC877635
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211283724|gb|FL009680.1|FL009680
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211402349|gb|FL009723.1|FL009723
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211407445|gb|FL009755.1|FL009755
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211285533|gb|FL009696.1|FL009696
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211407442|gb|FL009752.1|FL009752
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTTCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211410003|gb|FL009763.1|FL009763
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGTCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211285534|gb|FL009697.1|FL009697
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|76287404|gb|DV026972.1|DV026972
EST:     CCGCGTCGCTCGGTAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211404891|gb|FL009738.1|FL009738
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211281914|gb|FL009670.1|FL009670
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211404886|gb|FL009733.1|FL009733
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211283726|gb|FL009682.1|FL009682
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211410004|gb|FL009764.1|FL009764
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211402350|gb|FL009724.1|FL009724
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211407439|gb|FL009749.1|FL009749
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211407434|gb|FL009744.1|FL009744
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211402353|gb|FL009727.1|FL009727
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211407432|gb|FL009742.1|FL009742
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211404894|gb|FL009741.1|FL009741
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211285530|gb|FL009693.1|FL009693
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211285532|gb|FL009695.1|FL009695
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211404884|gb|FL009731.1|FL009731
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211283720|gb|FL009676.1|FL009676
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|149109952|gb|EE293761.2|EE293761
EST:     CCCCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCG
EST: gi|211409998|gb|FL009758.1|FL009758
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211402341|gb|FL009715.1|FL009715
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|148956922|gb|EC902851.2|EC902851
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211285529|gb|FL009692.1|FL009692
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|149010089|gb|EE041896.2|EE041896
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211399798|gb|FL009706.1|FL009706
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211402344|gb|FL009718.1|FL009718
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211410006|gb|FL009766.1|FL009766
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211407444|gb|FL009754.1|FL009754
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|74239694|gb|DT647608.1|DT647608
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211407435|gb|FL009745.1|FL009745
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211412555|gb|FL009775.1|FL009775
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211399802|gb|FL009710.1|FL009710
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|71767623|gb|DR965560.1|DR965560
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211404888|gb|FL009735.1|FL009735
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211399800|gb|FL009708.1|FL009708
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211402340|gb|FL009714.1|FL009714
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211409999|gb|FL009759.1|FL009759
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211412552|gb|FL009772.1|FL009772
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|211402348|gb|FL009722.1|FL009722
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
EST: gi|148968943|gb|EE019629.2|EE019629
EST:     CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATG                         CTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG
genomic: CCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 16 (upstream exon), 42 (downstream exon)
Score: 2

CATGTCCACGCAGATCTTCTGCGGGCAGCTCGGCAACCTGGAGCTCGCCGCCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCGCACAAGCACGGCATGCTGGGGGTGTACCTGCAGCGGTCGACGGTGCTGC


Block sizes: 39 (upstream exon), 34 (downstream exon)
Score: 30

CATGTCCACGCAGATCTTCTGCGGGCAGCTCGGCAACCTGGAGCTCGCCGCCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCGCACAAGCACGGCATGCTGGGGGTGTACCTGCAGCGGTCGACGGTGCTGC


Block sizes: 47 (upstream exon), 37 (downstream exon)
Score: 31

CATGTCCACGCAGATCTTCTGCGGGCAGCTCGGCAACCTGGAGCTCGCCGCCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCGCACAAGCACGGCATGCTGGGGGTGTACCTGCAGCGGTCGACGGTGCTGC


Block sizes: 45 (upstream exon), 44 (downstream exon)
Score: 11

CATGTCCACGCAGATCTTCTGCGGGCAGCTCGGCAACCTGGAGCTCGCCGCCGCGTCGCTCGGCAACACCGGCATCCAGTCCCTCGCCTACGGCCTCATGgtacgtgccc ... tggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCGCACAAGCACGGCATGCTGGGGGTGTACCTGCAGCGGTCGACGGTGCTGC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agcacagtatcacctcacgtacgtaaaaacacaagtcagctttttttggtccatctcatcatctctcatggtcggccgccgcccgccggatggtgtgcagCTGGGGATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCGCACAAGCACGGCATGCTGGGGGTGTACCTGCAGCGGTCGACGGTGCTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - - -ttttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccgccg