1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attccttttcttgtcagtctttccttttcttgtaccatgagttgcattgcatattatgcagctacggaactgatatacctgttaatattcatgtggccagTGGAAATTTGCATTTATATCAATGAATCGGCCAGACTACCTCCAGGATTCAGATGTTGTACCTACTGGCTTTCAG
species | Zea mays |
transcript | GRMZM2G418232_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCGCATACAGAGTAAACTGCAAGTCTCTGCTGATGAATTTTCCNAG TGGAAATTTGCATTTATATCAATGAATEST: gi|113652778|gb|DW812391.1|DW812391
genomic: AGAAGCGCATACAGAGTAAACTGCAAGTCTCTGCTGATGAATTTTCCAAGgtgatccatc ... atgtggccagTGGAAATTTGCATTTATATCAATGAAT
EST: GAATTTTCCAAG TGGAAATTTGCATTTATATCAATGAATCGGCCAGACTACCTCCAGGATTCAEST: gi|60341150|gb|DN208123.1|DN208123
genomic: GAATTTTCCAAGgtgatccatc ... atgtggccagTGGAAATTTGCATTTATATCAATGAATCGGCCAGACTACCTCCAGGATTCA
EST: AGAAGCGCATACAGAGTAAACTGCAAGTCTCTGCTGATGAATTTTCCAAG TGGAAATTTGCATTTATATCAATGAATCGGCCAGACTACCTCCAGGATTCA
genomic: AGAAGCGCATACAGAGTAAACTGCAAGTCTCTGCTGATGAATTTTCCAAGgtgatccatc ... atgtggccagTGGAAATTTGCATTTATATCAATGAATCGGCCAGACTACCTCCAGGATTCA
attgcatattatgcagctacggaactgatatacctgttaatattcatgtggccagTGGAAATTTGCATTTATATCAATGAATCGGCCAGACTACCTCCAGGATTCAGATGTTGTACCTACTGGCTTTCAG
tgttaat putative branch site (score: 56)
ttaatattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attccttttcttgtcagtctttccttttcttgtaccatgagttgcattgcatattatgcagctacggaactgatatacctgttaatattcatgtggccagTGGAAATTTGCATTTATATCAATGAATCGGCCAGACTACCTCCAGGATTCAGATGTTGTACCTACTGGCTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG