1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgtgtaatagttttgtccattgtatttggtggctgtggttccaatctagaaaatcctaagtaacctcataagtgcatctatcaattggtgtagATTCCAGAAGAGGAAAAAAATATAGGCCCAAATGATCGGCTAATTCATGTTTATCACTTCAAGAAAGATATTAATCAGACTCAG
species | Zea mays |
transcript | GRMZM2G418232_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAAGATAGAGAATATAAACGACCAATATTGGACACTACGTGCTGAGGAG ATTCCAGAAGAGGNNNNNNNTATAGGCCCAAATGATCGGCTAATTCATGTTEST: gi|78113609|gb|DV532000.1|DV532000
genomic: AGAAGATAGAGAATATAAACGACCAATATTGGACACTACGTGCTGAGGAGgtgtgtaata ... attggtgtagATTCCAGAAGAGGAAAAAAATATAGGCCCAAATGATCGGCTAATTCATGTT
EST: AGAAGATAGAGAATATAAACGACCCATATTGGACACTACGTGCTGAGGAG ATTCCAGAAGAGG
genomic: AGAAGATAGAGAATATAAACGACCAATATTGGACACTACGTGCTGAGGAGgtgtgtaata ... attggtgtagATTCCAGAAGAGG
ttccaatctagaaaatcctaagtaacctcataagtgcatctatcaattggtgtagATTCCAGAAGAGGAAAAAAATATAGGCCCAAATGATCGGCTAATTCATGTTTATCACTTCAAGAAAGATATTAATCAGACTCAG
aagtaac putative branch site (score: 39)
tagaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtaatagttttgtccattgtatttggtggctgtggttccaatctagaaaatcctaagtaacctcataagtgcatctatcaattggtgtagATTCCAGAAGAGGAAAAAAATATAGGCCCAAATGATCGGCTAATTCATGTTTATCACTTCAAGAAAGATATTAATCAGACTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA