1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtagtgcaattattgagttatatttgaagatagctattcgatatttttgtgtgtcaagaattgacattgtttttgacctacagCAGATTCAGAACTTTGGAGACCCTTTCGTTTTGGTCGTTCATGAAGGTGAGACTTTAGCAGAAGTCAAGAAGCGCATACAGAGTAAACTGCAAGTCTCTG
species | Zea mays |
transcript | GRMZM2G418232_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATCGGCTAATTCATGTTTATCACTTCAAGAAAGATATTAATCAGACTCAG CAGATTCAGAACTTTGGAGACCCTTTCGTTTTGGTCGTTCATGAAGGTGAGEST: gi|60341150|gb|DN208123.1|DN208123
genomic: ATCGGCTAATTCATGTTTATCACTTCAAGAAAGATATTAATCAGACTCAGgtagtgcaat ... tgacctacagCAGATTCAGAACTTTGGAGACCCTTTCGTTTTGGTCGTTCATGAAGGTGAG
EST: AAGATATTAATCAGACT--- CAGATTCAGAACTTTGGAGACCCTTTCGTTTTGGTCGTTCATGAAGGTGAG
genomic: AAGATATTAATCAGACTCAGgtagtgcaat ... tgacctacagCAGATTCAGAACTTTGGAGACCCTTTCGTTTTGGTCGTTCATGAAGGTGAG
gatagctattcgatatttttgtgtgtcaagaattgacattgtttttgacctacagCAGATTCAGAACTTTGGAGACCCTTTCGTTTTGGTCGTTCATGAAGGTGAGACTTTAGCAGAAGTCAAGAAGCGCATACAGAGTAAACTGCAAGTCTCTG
ttttgac putative branch site (score: 31)
ttgttttt CT-rich tract
tattcgatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgcaattattgagttatatttgaagatagctattcgatatttttgtgtgtcaagaattgacattgtttttgacctacagCAGATTCAGAACTTTGGAGACCCTTTCGTTTTGGTCGTTCATGAAGGTGAGACTTTAGCAGAAGTCAAGAAGCGCATACAGAGTAAACTGCAAGTCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC