1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaatactgaattttctccatatatatattcaatggatgtgtgcatgttctttttcagcagccttggctcagtagacgatgaatgttgcagGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCCACAACAACAAGGATGCCAGAGCAAGGAACGTGTGAACGATGTGGCTAC
species | Zea mays |
transcript | GRMZM2G402242_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCATACGGTGGTTTTGTTCGTGAATTTATTAAAGATTTAGAAAGAATGAG GCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCEST: gi|71761950|gb|DR959887.1|DR959887
genomic: GCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAGgtaaatactg ... aatgttgcagGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTC
EST: GCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAG GCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCEST: gi|67014256|gb|CO443005.1|CO443005
genomic: GCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAGgtaaatactg ... aatgttgcagGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTC
EST: GCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAG GCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCEST: gi|50337085|gb|CO532211.1|CO532211
genomic: GCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAGgtaaatactg ... aatgttgcagGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTC
EST: CGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAG GCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCEST: gi|91872706|gb|EB402663.1|EB402663
genomic: CGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAGgtaaatactg ... aatgttgcagGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTC
EST: GCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAG GCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCEST: gi|60350684|gb|DN217657.1|DN217657
genomic: GCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAGgtaaatactg ... aatgttgcagGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTC
EST: GCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAG GCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCEST: gi|91878573|gb|EB408530.1|EB408530
genomic: GCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAGgtaaatactg ... aatgttgcagGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTC
EST: GCATACCGGGGTTTTGCTGGGGAATTTATTAAAGATTTAGAAAGAATGAG GCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCEST: gi|50323939|gb|CO519065.1|CO519065
genomic: GCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAGgtaaatactg ... aatgttgcagGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTC
EST: GCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAG GCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCEST: gi|101389613|gb|EB816739.1|EB816739
genomic: GCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAGgtaaatactg ... aatgttgcagGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTC
EST: CGTGAATTTATTAAAGATTTAGAAAGAATGAG GCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCEST: gi|71770542|gb|DR968479.1|DR968479
genomic: CGTGAATTTATTAAAGATTTAGAAAGAATGAGgtaaatactg ... aatgttgcagGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTC
EST: GCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAG GCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTC
genomic: GCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAGgtaaatactg ... aatgttgcagGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTC
atgtgtgcatgttctttttcagcagccttggctcagtagacgatgaatgttgcagGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCCACAACAACAAGGATGCCAGAGCAAGGAACGTGTGAACGATGTGGCTAC
ttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatactgaattttctccatatatatattcaatggatgtgtgcatgttctttttcagcagccttggctcagtagacgatgaatgttgcagGCCTAGAGCTATACTAGACATCATAAAATCCGGTGAAAATTTCAGAATCTCCACAACAACAAGGATGCCAGAGCAAGGAACGTGTGAACGATGTGGCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA