1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactctttacttgcaagcctttcacatgtatctttaattcttcactccatcttcacagacaatccttttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGCATAATGCAGATGACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTG
species | Zea mays |
transcript | GRMZM2G402242_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATTGGTCTAAAAAACAATTTGTACTTTCTGTGGAGTTTTTCGACGTCAG GCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGEST: gi|71774415|gb|DR972293.1|DR972293
genomic: AATTGGTCTAAAAAACAATT-GTACTTTCTGTGGAGTTTTTCGACGTCAGgtactcttta ... ttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGG
EST: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAG GCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGEST: gi|71761950|gb|DR959887.1|DR959887
genomic: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAGgtactcttta ... ttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGG
EST: CAATGGGTTTAAAAAACAATTGTACTTTTTGTGGAGTTTTTTGACGTCAG GCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGEST: gi|37416521|gb|CF645910.1|CF645910
genomic: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAGgtactcttta ... ttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGG
EST: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAG GCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGAEST: gi|67014256|gb|CO443005.1|CO443005
genomic: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAGgtactcttta ... ttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGA
EST: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGCCGTCAG GCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGEST: gi|50323940|gb|CO519066.1|CO519066
genomic: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAGgtactcttta ... ttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGG
EST: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAG GCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGEST: gi|91872706|gb|EB402663.1|EB402663
genomic: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAGgtactcttta ... ttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGG
EST: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTGTTCGACGTCAG GCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGEST: gi|26558362|gb|CA830597.1|CA830597
genomic: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAGgtactcttta ... ttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGG
EST: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAG GCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGEST: gi|87157289|gb|DY402078.1|DY402078
genomic: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAGgtactcttta ... ttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGG
EST: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAG GCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGEST: gi|71770543|gb|DR968480.1|DR968480
genomic: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAGgtactcttta ... ttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGG
EST: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAG GCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGEST: gi|91872707|gb|EB402664.1|EB402664
genomic: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAGgtactcttta ... ttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGG
EST: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAG GCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGEST: gi|22472216|gb|BU036696.1|BU036696
genomic: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAGgtactcttta ... ttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGG
EST: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAG GCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGEST: gi|50337086|gb|CO532212.1|CO532212
genomic: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAGgtactcttta ... ttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGG
EST: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAG GCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGG
genomic: CAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAGgtactcttta ... ttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGG
cacatgtatctttaattcttcactccatcttcacagacaatccttttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGCATAATGCAGATGACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTG
ctttaat putative branch site (score: 32)
tccttttctat putative PPT
tatctttaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactctttacttgcaagcctttcacatgtatctttaattcttcactccatcttcacagacaatccttttctatgtagGCACTAGATCGAGGTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGCATAATGCAGATGACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG