1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tccaaacgtaacgtatatcagaaatatattaattctattgacctgtgccacgattctgttagaattgagaatgggttaatttggctatatcatgatccagGCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAG
species | Zea mays |
transcript | GRMZM2G402242_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTATGCATACTTCAAAAAGCTGGATTACTTTTTCACAGATT GCATCTATTCACCAAATGCATACCGTGGTTTTGCTCEST: gi|91877954|gb|EB407911.1|EB407911
genomic: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctg ... catgatccagGCATCTATTCACCAAATGCATACCGTGGTTTTGCTC
EST: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAAT GCATCTATTCACCAAATGCATACGGTGGTTTTGTTCGTGAATTTATTAAAGEST: gi|71761950|gb|DR959887.1|DR959887
genomic: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctg ... catgatccagGCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAG
EST: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAAT GCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAGEST: gi|67014256|gb|CO443005.1|CO443005
genomic: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctg ... catgatccagGCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAG
EST: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAAT GCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAGEST: gi|50323940|gb|CO519066.1|CO519066
genomic: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctg ... catgatccagGCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAG
EST: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAAT GCATCTATTCACCAAATGCATACCEST: gi|91872706|gb|EB402663.1|EB402663
genomic: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctg ... catgatccagGCATCTATTCACCAAATGCATACC
EST: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAAT GCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAGEST: gi|60350684|gb|DN217657.1|DN217657
genomic: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctg ... catgatccagGCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAG
EST: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAAT GCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAGEST: gi|91878573|gb|EB408530.1|EB408530
genomic: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctg ... catgatccagGCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAG
EST: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAAT GCATCTATTCACCAAATGCATACCGGGGTTTTGCTGGGGAATTTATTAAAGEST: gi|71770543|gb|DR968480.1|DR968480
genomic: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctg ... catgatccagGCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAG
EST: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAAT GCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAEST: gi|50323939|gb|CO519065.1|CO519065
genomic: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctg ... catgatccagGCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTA
EST: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAAT GCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAGEST: gi|71770542|gb|DR968479.1|DR968479
genomic: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctg ... catgatccagGCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAG
EST: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAAT GCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAG
genomic: GTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAATgtaatgtctg ... catgatccagGCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAG
tgccacgattctgttagaattgagaatgggttaatttggctatatcatgatccagGCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAG
ggttaat putative branch site (score: 33)
ttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaaacgtaacgtatatcagaaatatattaattctattgacctgtgccacgattctgttagaattgagaatgggttaatttggctatatcatgatccagGCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - cagaaata
- - - - - - - - - - - - - - - - - - - - -cctgtgc