1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattgcaacccacttgtagttgcttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA
species | Zea mays |
transcript | GRMZM2G382240_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|6851609|gb|AW352619.1|AW352619
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCANCAACATTGAAATCGGAATTATTCGAGCEST: gi|29945873|gb|CB815863.1|CB815863
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: TGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|9953260|gb|BE639843.1|BE639843
genomic: TGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: AATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|211467417|gb|FK984374.1|FK984374
genomic: AATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|29543478|gb|CB605564.1|CB605564
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|32944790|gb|CF049609.1|CF049609
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: GCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|6993991|gb|AW453205.1|AW453205
genomic: GCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|5555273|gb|AI881224.1|AI881224
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: CTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|15352985|gb|BI502596.1|BI502596
genomic: CTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|6828067|gb|AW331710.1|AW331710
genomic: ACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
ttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA
tactaat putative branch site (score: 1)
taaatagttactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgcaacccacttgtagttgcttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA