1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaaatgtgcacatatgtgttaacaatcaccatgatactgtaggatgtaccttcgtaaactcaagagtcaagacaactgacattgttggctatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAG
species | Zea mays |
transcript | GRMZM2G382240_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAEST: gi|6851609|gb|AW352619.1|AW352619
genomic: GTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: TGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAEST: gi|211467417|gb|FK984374.1|FK984374
genomic: TGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGG-AAA
EST: TATGATGACAATGGCCCACAGTTGTATCAG GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAEST: gi|29543478|gb|CB605564.1|CB605564
genomic: TATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGG-AAA
EST: TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAEST: gi|6993991|gb|AW453205.1|AW453205
genomic: TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGG-AAA
EST: TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAEST: gi|166531900|gb|EG080480.1|EG080480
genomic: TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGG-AAA
EST: TGACAATGGCCCACAGTTGTATCAG GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAEST: gi|113576700|gb|DW751374.1|DW751374
genomic: TGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCAEST: gi|6828067|gb|AW331710.1|AW331710
genomic: TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCA
EST: TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGG-AAA
gtaccttcgtaaactcaagagtcaagacaactgacattgttggctatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAG
aactgac putative branch site (score: 2)
ctatttcttc putative PPT
tatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatgtgcacatatgtgttaacaatcaccatgatactgtaggatgtaccttcgtaaactcaagagtcaagacaactgacattgttggctatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG