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...gtgtaagatttagagcccattaccaccccctgtgtgccataacagatcatcctttccttctgatttcacatcttatatttataatatgttttcattgtagATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG
species | Zea mays |
transcript | GRMZM2G382240_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAG ATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACEST: gi|211467417|gb|FK984374.1|FK984374
genomic: TCAGCCATGGG-AAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatc ... ttcattgtagATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGAC
EST: TCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAG ATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACEST: gi|29543478|gb|CB605564.1|CB605564
genomic: TCAGCCATGGG-AAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatc ... ttcattgtagATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGAC
EST: TCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAG ATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACEST: gi|6993991|gb|AW453205.1|AW453205
genomic: TCAGCCATGGG-AAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatc ... ttcattgtagATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGAC
EST: TCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAG ATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACEST: gi|6828067|gb|AW331710.1|AW331710
genomic: TCAGCCATGGG-AAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatc ... ttcattgtagATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGAC
EST: TCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAG ATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGAC
genomic: TCAGCCATGGG-AAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatc ... ttcattgtagATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGAC
atcatcctttccttctgatttcacatcttatatttataatatgttttcattgtagATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG
ttctgat putative branch site (score: 3)
ttttcatt putative PPT
atttcacatcttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtaagatttagagcccattaccaccccctgtgtgccataacagatcatcctttccttctgatttcacatcttatatttataatatgttttcattgtagATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG