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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttacacagactcaattattactgccacctttatatgatccatgttcctcttgcctcatcaaatgatcaaatcactgcatcactcattgctcccat...

Basic information

species Zea mays
transcript GRMZM2G382240_T01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29945873|gb|CB815863.1|CB815863
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGCCCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAA
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAA
EST: gi|9953260|gb|BE639843.1|BE639843
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAAGT
EST: gi|32944790|gb|CF049609.1|CF049609
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAAGT
EST: gi|108954176|gb|EC365039.1|EC365039
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAAGT
EST: gi|5555273|gb|AI881224.1|AI881224
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAAGT
EST: gi|15352985|gb|BI502596.1|BI502596
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttacacagactcaattattactgccacctttatatgatccatgttcctcttgcctcatcaaatgatcaaatcactgcatcactcattgctcccat

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