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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgtttttgttgttggaaatctaaggctatttgatattacaaactccttgctacttcaaatggtttggtgagaactaacagtttccatacaaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAAGTTGTCTGTTGATGATTTACTGTTTCAAACAAGAATAGTAGCATCACTTAT

Basic information

species Zea mays
transcript GRMZM2G382240_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G382240_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 9
--------------tatgtttttgttgttggaaat--ctaaggctatttgatattacaaactccttgc---tacttca-aatggtttggtgagaactaacagtttccatacaaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAAGTTGTCTGTTGATGATTTACTGTTTCAAACAAGAATAGTAGCATCACTTAT--
                || |   | ||||    |   | | |  |||   ||   ||      ||||     |   || ||    ||  ||| || | ||  ||||  ||||||   ||||||||||| |||  ||||||||||||||||| ||||||||||||||||| |||||||||||   || |  ||||        ||  ||  ||    | |   
gtatgtcatacagacttgatcaagctgttttttactgccacgtatatgcaatgcaacttctgtcttgtgaacatgccataacaagttactgacaagttac--tttctgtacaaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAATTGTCTGTTGACATTTGATAGTTTACTGTTCTAA--GTGACACTCTTGAGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29945873|gb|CB815863.1|CB815863
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGCCCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAA
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAA
EST: gi|9953260|gb|BE639843.1|BE639843
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAAGT
EST: gi|32944790|gb|CF049609.1|CF049609
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAAGT
EST: gi|108954176|gb|EC365039.1|EC365039
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAAGT
EST: gi|5555273|gb|AI881224.1|AI881224
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAAGT
EST: gi|15352985|gb|BI502596.1|BI502596
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttgctacttcaaatggtttggtgagaactaacagtttccatacaaataacagAGTTCTAAGCCCATCAGAGATCAAGGATTTCATGGAAGAGGTGGAGTAAGTTGTCTGTTGATGATTTACTGTTTCAAACAAGAATAGTAGCATCACTTAT
                            aactaac  putative branch site (score: 1)
                                          atacaaataa  TA-rich tract