Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCGATCGATACATATGTATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcagatatggacctatattaccctgatcaccctctgagattgtatctgcgagatgttattggatacgtctcgatatattttccctaatctc...

Basic information

species Zea mays
transcript GRMZM2G370741_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G370741_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 5'ss of exon 9
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCGATCGATACATATGTATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcagatatggacctatattaccctgatcaccctctgagattgtatctgcgagatgt-----tattggatacgtctcgatatattt-tccctaa-----tctc-----------------------------------------------------------------------
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| ||| | |||||| | | ||| ||       |||| ||  | || ||  | |||  ||     ||  |  | | | || ||| |||| | ||||      ||||                                                                       
CAAGGCAAACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTTGATCGATACATATGGATTATTGGAATGATCTATGCTTACTTCCACCCTAATgtaagtaattcggttatggatccacatttcct------ccctttggaactgcatgagtgagcagtacatataccgtgttcctttc-atacatttcttcctagggagttctctcttattttaagaatatgttccttgtttatactatatattaatgtagcatggaatccgctatctgaaatag

upper sequence: GRMZM2G370741_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCGATCGATACATATGTATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcagatatggacctatattaccctgatcaccctctgagattgtatctgcgagatgttattggatacgtctcgatat---attttccctaatctc--
 ||| |  |  | || |   | ||||||||||||||| ||||||| || ||||| ||||| || || ||||||||||||||||| || || ||||| ||||||   || ||  |||    | | | |     || |||     | |  || | | |   | |  |  |        | |  || |   || || |   |||||  
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgta---atctcgaatactagcttttgtag---tggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag

upper sequence: GRMZM2G370741_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCGATCGATACATATGTATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcagatatggacctatattaccctgatcaccctctgagattgtatctgcgagatgttattggatacgtctcgatat---attttccctaatctc--
 ||| |  |  | || |   | ||||||||||||||| ||||||| || ||||| ||||| || || ||||||||||||||||| ||||| ||||| ||||||   || ||  |||    | | | |      | |   | |  |  ||| | | |   | || |  |        | |  || |   || || |   |||||  
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgta---atctccaatactagcttgtgt------ggtggtcattgggtattttttttataatatttagtccagctattttaaatttgaaatatttcaccatctcag